Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12r
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...   175   2e-44
At1g50730.1 68414.m05705 expressed protein                             31   0.54 
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ...    29   2.2  
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s...    28   5.0  
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s...    28   5.0  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   6.7  
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain...    28   6.7  
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains...    27   8.8  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    27   8.8  

>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
            putative very strong similarity to SP|P23413 ATP synthase
            alpha chain, mitochondrial (EC 3.6.3.14) {Brassica
            campestris}; contains Pfam profiles PF00006: ATP synthase
            alpha/beta family nucleotide-binding domain, PF00306: ATP
            synthase ab C terminal, PF02874: ATP synthase alpha/beta
            family beta-barrel domain
          Length = 777

 Score =  175 bits (427), Expect = 2e-44
 Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
 Frame = -2

Query: 687  ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA 508
            ETELFY+GIRPAINVGLSVSRVGSAAQ KAMKQV GS KLELAQYREVAAFAQFGSDLDA
Sbjct: 626  ETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDA 685

Query: 507  ATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHI 328
            ATQ LLNRG RLTE+ KQ QY P+ IE+Q+ +IY  V G  D++   +I+ +EK     +
Sbjct: 686  ATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSV 745

Query: 327  KTS-HQGLLSTIAKDGQITPESDASLKK 247
            K    Q L   +  + ++ P  DA LK+
Sbjct: 746  KPELLQALKGGLTNERKMEP--DAFLKE 771


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = -2

Query: 513 DAATQQLLNR---GMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLDKLDPSKITAFE 349
           D +  Q+LN    G RL+E   Q  ++   I+E  Q A  Y  +  +L  +D       +
Sbjct: 448 DCSFSQVLNYRLLGNRLSEGKSQEGFLSSLIDEVIQAASQYQSLYDYLRIMDAYVDLMLQ 507

Query: 348 KEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFTQSQ 208
            +   H+      ++S +A+D  ++ E  ASL+ I+   L+ F   Q
Sbjct: 508 NKMENHLDALLDDIVS-LARDKFLSEEEQASLQSIILKLLSHFENLQ 553


>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 590

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
 Frame = -2

Query: 657 PAINVGLSVSRVGSAAQTKAMKQVAG---SMKLELAQYR-EVAAFAQFGSDLDAATQQLL 490
           PA+ +  S  R+  A + K +KQV G     +L LA  R ++AA  Q   D+++  + +L
Sbjct: 46  PALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGIL 105

Query: 489 NRGMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLD 382
           +      E+ +    +   + E  + A+     +GHLD
Sbjct: 106 SGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLD 143


>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial (TYKY) identical to SP|Q42599
           NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}
          Length = 222

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 673 LQRYPTSHQRRSVCIACRIC 614
           L+RYPT  +R   CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129


>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial, putative very strong similarity
           to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
           profile PF00037: iron-sulfur cluster-binding protein
          Length = 222

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 673 LQRYPTSHQRRSVCIACRIC 614
           L+RYPT  +R   CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 348  KEFTQHIKTSHQGLLSTIAKDGQIT 274
            ++  QH  T H+GLLST  KDG I+
Sbjct: 940  QQLFQHCHTHHEGLLST-KKDGMIS 963


>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 268

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 256 GGVRLGGDLTVFGDRGEKTLVASFDVLSEFLL--EGSDFGGVQLVEVTADTAVN 411
           GG  + GD+ +  + G   +V   DVL E LL  E  D  G Q++    ++  N
Sbjct: 120 GGFLVNGDVKIVVEVGVLEVVGKSDVLEETLLVHESIDINGFQVLPSQVESVNN 173


>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 470

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 545 SQLLPSSVLTWMP-LHSSCSTEECVLLSSSSKDNMCPWLLR 426
           S L  S +LT +  L SSC  E  V+ +++ K+ + P LLR
Sbjct: 327 SMLTLSGLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLR 367


>At4g14760.1 68417.m02271 M protein repeat-containing protein
           contains Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +1

Query: 373 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQ 495
           ++L+E  AD+     D++      ++ L+EEL + + ++ +
Sbjct: 9   IKLIEADADSFARRADMYFKKRPELMKLVEELYRAYRALAE 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,088
Number of Sequences: 28952
Number of extensions: 275581
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)