Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12f
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   167   9e-43
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    38   7e-04
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    31   0.082
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.4  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   5.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.2  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   7.2  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.5  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   9.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   9.5  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  167 bits (406), Expect = 9e-43
 Identities = 79/110 (71%), Positives = 96/110 (87%)
 Frame = +3

Query: 210 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 389
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 390 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNALGNPID 539
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVV+ALGNPID
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPID 144


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +3

Query: 408 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNALGNPID 539
           + + G + L++ G  V  TG+ + +PVG   LGR++N +G P+D
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVD 150


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 31.5 bits (68), Expect = 0.082
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 TGAIVDVPVGEQILGRVVNALGNPID 539
           TG  + +PV E +LGRV N  G PID
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID 117


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 348 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 247
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 494 LSDGNVYDSTSTLDNISFLDKLVIT 420
           L  GN+Y+STS  + +S LD   IT
Sbjct: 49  LEVGNIYNSTSASEILSTLDAKYIT 73


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 511 TRPRICSPTGTSTIAP 464
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 HLANYMSQPPTKLPRSPPSSKRGSLEP 249
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 157 QWPWHLANYMSQPPTKLPRSPPSSK 231
           Q P H  N+ S PP   P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 420 GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNA 521
           G D   KEG+ + ++       VGE  L RV+NA
Sbjct: 207 GIDVFDKEGESLGKSKKAAFYAVGETALSRVINA 240


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 119 RQAPGYRASNTSGDQRHFSQTYNCGRRKASYSARDS 12
           +Q   +++     DQ   ++ YN   R  ++SARDS
Sbjct: 378 QQYKAWKSQPKDRDQNQGNRAYNPPNRNQAFSARDS 413


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -1

Query: 327 SSSHKHERYHHQCSRHDQSLLDQPWARLQGSSLRGWWRS 211
           S   +H +Y H     D  L++  +A+ +    + W R+
Sbjct: 671 SDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLRT 709


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 485 GNVYDSTSTLDNIS 444
           GN+Y S +TLDNIS
Sbjct: 225 GNLYFSNTTLDNIS 238


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 148 RCPQWPWHLANYMSQPPTKLPRSPPSSKR 234
           R P+ P    +   QPP+  P +PP+ +R
Sbjct: 56  RLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,143
Number of Sequences: 5004
Number of extensions: 43095
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)