Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o12f
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 1e-24
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 39 0.003
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098) 29 1.8
SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 3.2
SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 5.6
SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87) 27 7.4
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 7.4
SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12) 27 7.4
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 27 7.4
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 109 bits (263), Expect = 1e-24
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +3
Query: 375 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNALGNPID 539
MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVV+ALGNPID
Sbjct: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPID 55
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 408 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNALGNPID 539
+ + G + LI+ G TG + +PVG + LGR++N +G PID
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPID 166
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 500 DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 390
D LSDG+ ++T N F+D+++ + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208
>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 312 HERY-HHQCSRHDQSLLD 262
HERY HHQ +RHD LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174
>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
Length = 1028
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 405 GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNAL 524
G+++FG D + +IVKR + P G+Q +G +NAL
Sbjct: 207 GLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 243
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 405 GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNAL 524
G+++FG D + +IVKR + P G+Q +G +NAL
Sbjct: 488 GLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 524
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 405 GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNAL 524
G+++FG D + +IVKR + P G+Q +G +N L
Sbjct: 871 GLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINDL 907
>SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 104 YRASNTSGDQRHFSQTYNCGRRKASYSARDSLR 6
+ N+S +Q HFS + KASY++ ++ R
Sbjct: 36 FNTCNSSSNQEHFSLGFTTSPEKASYTSNETKR 68
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 431 LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 267
L +T Y T +V F K H+ +L L+ D L + + ITN T +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457
>SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 351 PPSPQPGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSL-RGWWRSRQ 205
PP PQP +H+ H+ +HD L+++P+A + + +W R+
Sbjct: 66 PPKPQP----THQWRDLHNNHLQHDARLINRPYASEAKKGIDQAYWDRRK 111
>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 351 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVNALGN 530
++ +K + ++P G+VV G D + E D+ K I+ V RV + GN
Sbjct: 36 DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRVFGS-GN 94
>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 345 SPQPGCSSSHKHERYHHQCSRH 280
SP P SS H H R H+ C H
Sbjct: 61 SPLPLSSSHHHHHRRHYLCHHH 82
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 27.9 bits (59), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 336 PGCSSSHKHERYHHQCSRHDQSL 268
PG H+H R+HH +H++ +
Sbjct: 922 PGKKHKHRHRRHHHHRRQHNRKI 944
>SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)
Length = 528
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +3
Query: 399 NVGVVVFGN--DKLIKEG----DIVKRTGAIVDVPVGEQILGRVVN 518
NV +VF N KL+K+G D+V G VD V E ILG +++
Sbjct: 51 NVEKLVFLNRASKLVKDGSRYTDVVAMVGRTVDRCVNEAILGELMS 96
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 366 GLRRTPPSPQPGCS 325
GL PPSPQPGC+
Sbjct: 724 GLPPPPPSPQPGCA 737
>SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 17 RERSNWLSVCHNYKFVKNVADLRSYCW 97
+E L +C +YK +KN + +S+ W
Sbjct: 225 KEVGELLKMCSSYKILKNFTEAKSHTW 251
>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
Length = 923
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 336 PGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSLRG 223
P SHK +RY +C+RH + L P RL S+ G
Sbjct: 490 PRVLDSHKRDRYRGRCTRHPRVL---PTPRLYVVSIFG 524
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 378 ALNLEPDN-VGVVVFGNDKLIKEGDIVKR 461
ALN+ N +G + N K++ EGDIVKR
Sbjct: 248 ALNITNSNSLGEIFTRNGKMLVEGDIVKR 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,696
Number of Sequences: 59808
Number of extensions: 370487
Number of successful extensions: 1312
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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