Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12f
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.1  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 2   STATSRERSNWLSVCHNYKFVKNVADLRSY 91
           S   S+    WL V  NYK +   A  R Y
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREY 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 18  ASGVTGFPSATIISL*KMSLISARIAGSVARRLPNAATQVS 140
           +SGV     A  +S+  +S+I+AR AG       NAA   S
Sbjct: 628 SSGVLAKKVADRVSMLMISVITARHAGEYVCTAENAAGTAS 668


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 515 YYTPKDLLSDGNVYDSTSTLDNISFLDK 432
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 515 YYTPKDLLSDGNVYDSTSTLDNISFLDK 432
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 2   STATSRERSNWLSVCHNYKFVKNVAD 79
           S   S   + WL V  NYK V   A+
Sbjct: 427 SAGFSSSSNTWLRVNENYKTVNLAAE 452


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 2   STATSRERSNWLSVCHNYKFVKNVAD 79
           S   S   + WL V  NYK V   A+
Sbjct: 427 SAGFSSSSNTWLRVNENYKTVNLAAE 452


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 333 GCSSSHKHERYHHQCSRHDQS 271
           G  S   H++ HH  S H Q+
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQA 824


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 512 YTPKDLLSDGNVYDSTSTLDNISF 441
           YTP+ L   GNV + +S   N  F
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKF 379


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 GAAPKADLEETGRVLSIGDGIARVY 317
           GA P+   EET ++  +   I R Y
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTY 102


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 255 KADLEETGRVLSIGDG 302
           K D+EETGR    G G
Sbjct: 72  KTDIEETGRGKGRGHG 87


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 253 GAAPRILSSRMVEISAALWVVETCS 179
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 253 GAAPRILSSRMVEISAALWVVETCS 179
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 253 GAAPRILSSRMVEISAALWVVETCS 179
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 127 AALGKRLATEPAIRAEISDIFHKLI 53
           ++ GK LATEP + + ++  F + I
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNI 371


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 243 GAAPKADLEETGRVLSIGDGIARVY 317
           GA P+   EET ++  +   I R Y
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTY 102


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 411 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSS 319
           PH   Q P  G  P   +  PP   PG   S
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,735
Number of Sequences: 438
Number of extensions: 3408
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)