Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o11r
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    32   0.34 
U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 99  IPATASLRF*RKVSIDFSKDSNTDIKIFPQGMRYFFTIKGGLCHSPDLQVLGLKTQL 269
           +P  A +R+  + + DF+  S  D+ + P+  R  F  + G C  PD+++  LK  L
Sbjct: 61  VPTDAPVRYEFERTKDFNSLSQGDLSLTPKRNRREFDCEDGSCFLPDVEMDRLKRDL 117


>U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical
           protein C02H7.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 487 VHNALIPLNKVK*ILYILEYNHLIQNNMSIVFFIXSYYIG-LVYASTLLN 633
           V   L+  N+   I+Y +EY H+     S+   +  Y++G LV   TL +
Sbjct: 120 VQLGLMAGNRFVSIVYPMEYKHIFSRTRSLYLILFGYFLGFLVSLPTLFD 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,336
Number of Sequences: 27780
Number of extensions: 269766
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)