Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o11f
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    26   0.19 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.59 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.59 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.6  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 485 LKLTLVAFADECVAIRAVVLSLLECIKAV 399
           L L L    DEC  +R  ++S L+C+  V
Sbjct: 368 LPLFLTQLKDECPEVRLNIISNLDCVNEV 396


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 45  HYGFVAPALSNPIPDSVG-AYPPAKPFTPPGVYPHP 149
           H G     L +    S+G   PP  PF P G YP+P
Sbjct: 141 HMGIPPYQLDSKTAGSMGLTRPPMYPF-PAGQYPYP 175


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 45  HYGFVAPALSNPIPDSVG-AYPPAKPFTPPGVYPHP 149
           H G     L +    S+G   PP  PF P G YP+P
Sbjct: 33  HMGIPPYQLDSKTAGSMGLTRPPMYPF-PAGQYPYP 67


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 193 YHLHHQAYQSVLFFQTLWV 249
           YHL  + Y ++L+F  + V
Sbjct: 322 YHLEIEKYYNILYFCRIMV 340


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 405 SSTGSNPGSIVNK 367
           S+T  NPG+ +NK
Sbjct: 278 SNTNYNPGTYINK 290


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 9   LPPPYSSVVGTTHYGFVAPALSNPIPDSV 95
           +PP YS+      YG+     + P P  V
Sbjct: 35  MPPHYSNYHYEDPYGYTGSEETPPSPQEV 63


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 9   LPPPYSSVVGTTHYGFVAPALSNPIPDSV 95
           +PP YS+      YG+     + P P  V
Sbjct: 35  MPPHYSNYHYEDPYGYTGSEETPPSPQEV 63


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 9   LPPPYSSVVGTTHYGFVAPALSNPIPDSV 95
           +PP YS+      YG+     + P P  V
Sbjct: 35  MPPHYSNYHYEDPYGYTGSEETPPSPQEV 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,956
Number of Sequences: 336
Number of extensions: 3059
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)