Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o11f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    33   0.029
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    31   0.15 
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    29   0.36 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        28   1.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.5  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   2.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   3.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.3  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    25   5.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.8  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   5.8  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   7.7  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   7.7  

>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = +3

Query: 6   DLPPPYS--SVVGTTHY-----GFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTN 164
           D+PPPYS  SV G + Y     G+     +    ++  A  P   F PP V P P     
Sbjct: 320 DIPPPYSTPSVAGASDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAV 379

Query: 165 AT 170
            T
Sbjct: 380 TT 381


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  PALSNPIPDSVGAYPPAKPFTPPGVYPHP 149
           P++SNP  D+V +  P  P  P  V PHP
Sbjct: 132 PSISNPPVDTVISDSPTSPHPPSFVQPHP 160


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 357 ITIVCSLCCLGLIPYCFDTFKEAEHYCPNC-NTFI 458
           +T++C  C          T  E++ YCPNC N F+
Sbjct: 41  LTLICKKCRKAFRIQFDQTMDESDEYCPNCDNHFV 75


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 75  NPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNM-QPSR 191
           N  P + G YPP   +T P   P+    +N TV+  QP R
Sbjct: 4   NSNPYNGGQYPPYNTYTRPNYSPNNGSQSNNTVHQYQPPR 43


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 108 PAKPFTPPGVYPHPEGVTNATVNMQPS 188
           PA P  PP   P P G  NA ++  P+
Sbjct: 635 PATPSNPPRSLPPPSGQVNAPMSQTPN 661


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 78  PIPDSVGAYPPAKPFTPPGVYPHPEGVTNA 167
           P P S+ +   A PF P  V P P   T +
Sbjct: 472 PPPSSINSNRAASPFRPTSVSPQPSSPTKS 501


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 194 YSRRLHIYSCICYTFGMGVNSWRSKWFSRWICSYR 90
           Y   L +Y    Y   +  NSW++ WF   + S R
Sbjct: 173 YKNHLEVYGRTTYNIVLH-NSWQASWFKSMLTSVR 206


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 GLIPYCFDTFKEAEHYCPNCNTFIGKSN 470
           G +    D  K++EH+   C+ F GK+N
Sbjct: 335 GTLKISDDVLKKSEHFMDFCSNFKGKNN 362


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 78  PIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQP 185
           P P   G+ PP  P  P  +Y  P   T  TV+  P
Sbjct: 347 PTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNP 382


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 154 PSGWG*TPGGVNGLAGGYAPTESGIG 77
           P G+G  PGG  G  GG+     G G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 30  VVGTTHYGFVAPALSNP---IPDSVGAYPPAKPFTPP 131
           ++G + YG+   + +N      ++ G+YPP +P T P
Sbjct: 92  LLGPSRYGYYPQSYANQSYTYGNNFGSYPPTQPSTQP 128


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 PAKPFTPP-GVYPHPEGVTNATVNMQPS 188
           PA+P T P G YPHP    + TVN   S
Sbjct: 126 PAEPGTAPLGTYPHP--CVHLTVNTDVS 151


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 2    RRSSTAVLIGCRNYALWLCGS 64
            +R +  +L+GC + AL+ CGS
Sbjct: 1720 KRCAVTILMGCSSGALYECGS 1740


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 326 HTFNCWVDLLDHYSLFTMLPGFDPVLL 406
           HTF+ W  L  H+  F    G DP +L
Sbjct: 290 HTFSEWRALFMHFFPFINSEGVDPAIL 316


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 105 PPAKPFTPPGVYPHPEGV 158
           PP+ P TP  + P P+G+
Sbjct: 545 PPSSPSTPISMNPRPKGI 562


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +3

Query: 357 ITIVCSLCCLGLIPYCF--DTFKEAEHYCPNC 446
           + ++C  C      YC   D     E YCPNC
Sbjct: 136 VLLLCDGCDDAYHTYCLNMDAVPIEEFYCPNC 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,615
Number of Sequences: 5004
Number of extensions: 44819
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)