Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o11f
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 36 0.022
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 31 0.13
01_07_0082 - 40965947-40967023 31 0.84
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 1.1
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 30 1.1
05_01_0142 - 940421-940701,941262-941574 30 1.5
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 29 1.9
06_01_0486 - 3455030-3455770 29 1.9
09_06_0099 - 20854828-20855117,20855231-20855423,20855507-208556... 29 2.6
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 2.6
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 2.6
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.4
06_03_1310 + 29238644-29240260 29 3.4
01_06_1682 - 39130696-39131705,39132355-39132583 29 3.4
12_02_1174 - 26696869-26698191 28 4.5
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 4.5
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 28 4.5
12_01_0829 + 7674416-7674471,7675043-7675129,7675210-7675250,767... 28 5.9
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 28 5.9
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 27 7.8
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 35.9 bits (79), Expect = 0.022
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 12 PPPYSSVV----GTTHYGFV--APALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATV 173
PPPY+S G++ Y AP + P P V PP P PPG P +G N
Sbjct: 439 PPPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPPGTAPSTDGAQNYPP 498
Query: 174 NMQP 185
+ P
Sbjct: 499 GVTP 502
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 31.1 bits (67), Expect(2) = 0.13
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPP 131
PPP SS +T AP +P+P+ + +PP P PP
Sbjct: 55 PPPSSSA--STAAPLPAPPTPSPVPEHLHHHPPPPPPVPP 92
Score = 21.0 bits (42), Expect(2) = 0.13
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 105 PPAKPFTPPGVYPHP 149
PP P PP PHP
Sbjct: 124 PPHPPEDPPPHPPHP 138
>01_07_0082 - 40965947-40967023
Length = 358
Score = 30.7 bits (66), Expect = 0.84
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +3
Query: 15 PPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPG-------VYPHPEGVTNATV 173
PP S+ T Y P + + AYPP + PPG YP P G AT
Sbjct: 171 PPQSTYPPPTAY----PTAAKADGSAAAAYPPQSAYPPPGKGNEPSTAYPPPAGYPPATG 226
Query: 174 NMQPSR 191
+ +P++
Sbjct: 227 SSKPAK 232
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 48 YGFVAPALSNP-IPDSVGAYPPAKPFTPPGVYP 143
YG PA + P + AYPP + PP YP
Sbjct: 151 YGQAPPAPAYPPSAAAAAAYPPQSTYPPPTAYP 183
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/46 (43%), Positives = 20/46 (43%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 149
PPP S T A ALS P P GA PP P PG P P
Sbjct: 904 PPPAPSATANT-----ASALSPPPPRPPGAPPPPPPPGKPGGPPPP 944
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 96 GAYPPAKPFTPPGVYPHPEG 155
GAYPP + PPG YP P+G
Sbjct: 212 GAYPPPGSYPPPGSYP-PQG 230
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 96 GAYPPAKPFTPPGVYPHPEG 155
G+YPP + P G YP P+G
Sbjct: 218 GSYPPPGSYPPQGSYPPPQG 237
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 84 PDSVGAYPPAKPFTPPGVYPHPEG 155
P GAYPP + PG YP P G
Sbjct: 62 PPPPGAYPPQHGYPQPGGYPPPGG 85
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +3
Query: 15 PPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEG 155
PP+ G G+ P + P P GAYPP PPG YP P G
Sbjct: 30 PPHQ---GYPPQGYPPPPGAYPPPP--GAYPP-----PPGAYPPPPG 66
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 143
PPP + G + + + S+P P A PP K PP P
Sbjct: 8 PPPLCPLCGHPAASYTSSSSSSPSPSQPTARPPLKRKAPPEAPP 51
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSVGAY--PPAKPFTPPGVYPHP 149
PPP V + +V P + P P V Y PP P+ PP P P
Sbjct: 86 PPPTPPYVPSPP-PYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSP 132
>09_06_0099 -
20854828-20855117,20855231-20855423,20855507-20855668,
20856384-20856497
Length = 252
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 143 GVNSWRSKWFSRWICS 96
GVNSW+S+W S +CS
Sbjct: 114 GVNSWKSEWNSYGVCS 129
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +3
Query: 6 DLPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQP 185
D PP S Y AP +NP P YPP P Y +P P
Sbjct: 59 DQPPSAPSYAPPPQYAGYAPPYNNPNP---APYPPESSPAPAPYYSYPPTAAGVATQHAP 115
Query: 186 S 188
+
Sbjct: 116 A 116
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 69 LSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQ 182
L P+PD PP P +PP V P P T +Q
Sbjct: 1114 LGPPLPDDRPPSPPPLPSSPPPVPPPPPAPITQTGQLQ 1151
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 63 PALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQP 185
P P PD + PP+ PP VYP P VT + + P
Sbjct: 408 PLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAP 448
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 78 PIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQP 185
P P + PP PP +YP P VT + + P
Sbjct: 537 PSPPEIAPSPPIVTPMPPIIYPSPPEVTPSPPEITP 572
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSV----GAYPPAKPFTPP-GVYPHPEG 155
PP SS T H G+V P L+ P P + A P P +PP + P+G
Sbjct: 438 PPSSSSSPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQG 490
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALS-NPIPDSVGAYPPAKPFTPP 131
PPPY S +Y PA +P P + G+ PP ++PP
Sbjct: 309 PPPYKSPPIPPYYFNSPPANHYSPPPYNFGSSPPTYQYSPP 349
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 LPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPP-AKPFTPPGVYPHPEGVTNATVNMQP 185
L PP T V P + P P PP + P PP V P G T A V +P
Sbjct: 185 LQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKP 244
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = +3
Query: 12 PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 149
PPP S T A AL P P GA PP P PG P P
Sbjct: 599 PPPAPSATANT-----ASALPPPPPRPPGAPPPPPPPGKPGGPPPP 639
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 175 FTVAFVTPSGWG*TPGGVNGLAGGY 101
F VAF P G+G GG LAG Y
Sbjct: 148 FAVAFSPPGGYGGDGGGAPALAGQY 172
>12_01_0829 +
7674416-7674471,7675043-7675129,7675210-7675250,
7675433-7675755
Length = 168
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 149 GMGVNSWRSKWFSRWICSYR-IRDRIT*CRSHKAI 48
G+GV +WRS W R + R RD + C H+ +
Sbjct: 120 GVGVGAWRSCWHPRRVDVLRDRRDDLRACELHRLV 154
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 12 PPPYSSV-VGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEG 155
PPP S G G PA+ IP GA+ P P + PGV P P G
Sbjct: 205 PPPLPSPGAGAPRGGSATPAM---IPGHPGAFYPFPPPSLPGVGP-PRG 249
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 72 SNPIPDSVGAYPPAKPFTPPGVYPHP 149
+ P+ G PP PPGVY HP
Sbjct: 70 AQPMIPPYGTPPPPYVMYPPGVYAHP 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,075
Number of Sequences: 37544
Number of extensions: 317057
Number of successful extensions: 1284
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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