Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o11f
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)               33   0.12 
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)                 31   0.86 
SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)              30   1.1  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                29   2.6  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)           29   2.6  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   29   3.5  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              29   3.5  
SB_28779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               28   4.6  
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            28   6.1  
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)              27   8.0  
SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 27   8.0  

>SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)
          Length = 245

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 143
           PPP  S      Y F  P    P P    A+PP+ PF+PP  YP
Sbjct: 169 PPPVLSPQVYRCYPFQYPG--TPPPPMYPAFPPSFPFSPPPEYP 210


>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
          Length = 245

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 143
           PPP  S      Y F  P    P P    A+PP+ P +PP  YP
Sbjct: 169 PPPVLSPQVYRGYPFQYPG--TPPPPMYPAFPPSFPSSPPPEYP 210


>SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
          Length = 154

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 143
           PPP  S      Y F  P    P P    A+PP+ P +PP  YP
Sbjct: 79  PPPALSPQVYRGYPFQYPG--TPPPPMYPAFPPSFPSSPPPEYP 120


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 57  VAPALSNPIPDSVGAYPPAKPFTPPGVY---PHPEGVTNATVNMQPS 188
           +A  LS  +   V +YPP  P +PP  Y   P P   +   +N +PS
Sbjct: 102 IAYILSWSLEFGVRSYPPPPPGSPPPAYTEMPPPYSPSTGAMNAEPS 148


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  SNPIPDSVGAYPPAKPFTPPGVYPHPE 152
           ++PIP S   Y P  P  PP V+P  E
Sbjct: 666 TSPIPPSAPTYGPTPPPLPPRVHPRVE 692


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 12   PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFT 125
            PPP  +++       + P  S+P P S+G+ PP+ PF+
Sbjct: 1734 PPPRLAILNWAD--LLPPPPSHPPPSSLGSPPPSPPFS 1769


>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 176 IYSCICYTFGMGVNSWRSKWFSR 108
           I +C+C     GVN W  KW +R
Sbjct: 228 ILACVCLVVVTGVNCWSVKWATR 250


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30  VVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPP-GVYPHP 149
           V  T + G   PA     P + G YPPA    PP G Y +P
Sbjct: 13  VRNTPYMGGYPPAAPGGYPPAPGGYPPAPGGYPPSGGYGYP 53



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPD-SVGAYPPAKPFTPPGVYPHP 149
           PPP     G      +AP +  P P    GA P ++P+  P    +P
Sbjct: 59  PPPQPGYAGGPPPPGIAPGIGGPPPSGQYGAPPTSQPYGAPPTSGYP 105


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 15  PPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 149
           PP SS++ T ++   +P  + P P ++   PP    +PP   P P
Sbjct: 284 PPLSSLIATHNH---SPPNTAPSPPNIAPSPPNIAPSPPNTAPSP 325


>SB_28779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 9   LPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTP 128
           +P PYSS   TT    V  + +  I +S+G +PP+  FTP
Sbjct: 1   MPVPYSS---TTSRKLVLTSGAAVIHNSLGDFPPSSRFTP 37


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 9   LPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPP 131
           LPP YS  + +  Y   +P +SN    +    P +  + PP
Sbjct: 639 LPPSYSQAMNSRQYPGFSPTISNRETSAFTQTPQSPSYRPP 679


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +3

Query: 270 CFNCNKIVTTRVTYTTAWHTHL--IAGSICLITIVCSLCCLGLIPYCFDTFKEAEHYCPN 443
           C  CN+ V        A  T    +   IC+   V +  C     YC  T     +YCP 
Sbjct: 380 CPLCNESVNGNQKIYFAMDTSYNDLTCQICMDAEVNTAFCPCGHVYCCQTCASNLYYCPL 439

Query: 444 CNTFI 458
           C TFI
Sbjct: 440 CKTFI 444


>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 680

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 36  GTTHYG-FVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPE 152
           G  H G  V P+  +   DS G  PP     PPG  P P+
Sbjct: 611 GWLHKGSIVCPSCQDICYDSPGICPPVVVPAPPGTQPQPK 650


>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 51  GFVAPA-LSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTN 164
           GF++P  + +P+P+ V + P      P G+   PEG+++
Sbjct: 143 GFLSPIWVISPLPEGVSSLPEGLSSLPEGLSSLPEGLSS 181


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 63  PALSNPIPDSVGAYPPAKPFTPPGVYPHPE 152
           P L    P S   YPP+ P  PP ++ +P+
Sbjct: 286 PTLPPRYPPSPPRYPPSPPRYPPSLHRYPQ 315


>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 42  THYGFVAPALSNPIPDSVGAYPPAKPFTPPG---VYPHPEGVTNATVNMQP 185
           T Y    P LS+P   + G Y P +P  P G    YP  + +T+A    QP
Sbjct: 56  TEYNTYPPPLSHPNDPTRGFYSPVQPSGPYGEQAFYP-TQDLTDALPIQQP 105


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/100 (22%), Positives = 33/100 (33%)
 Frame = +3

Query: 18  PYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQPSRXX 197
           P +S   TT Y       S     S  +Y P   +TP   Y      T +T +  P+   
Sbjct: 4   PTTSYTSTTSYTTTTSYTSTTSYTSTTSYTPTPSYTPTTSYTSTTSYT-STTSYTPTPSY 62

Query: 198 XXXXXXXXXXXXXNAMGTEPTTLTCFNCNKIVTTRVTYTT 317
                        +   T  TT T +      T+  +YT+
Sbjct: 63  TPTTSYTTTTSYTST--TSYTTTTSYTPTTSYTSTTSYTS 100


>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 718

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEG 155
           P  Y S +G+   G   P +    P   G  PP     PPG+   P G
Sbjct: 286 PGMYPSGIGSPSIGSGPPGMEEG-PPGTGGGPPGSVGAPPGMGDGPPG 332


>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 622

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
 Frame = +3

Query: 30  VVGTTHYGFVAPALSNPIPDSVG----------AYPPAKPFTPPGVYPHP 149
           VV T  Y  + P +SN    ++G           YPP +P  PPG Y  P
Sbjct: 394 VVSTVPYILLRPCISNKGVSAIGNCQMAILRPKGYPPQQPSYPPGGYGGP 443


>SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 143
           P P   +    + G+       P P    A+PP+ P +PP  YP
Sbjct: 130 PGPLPVLSPQVYRGYPFQYPGTPPPPMYPAFPPSFPSSPPPEYP 173


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 12  PPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPP 131
           PPP  +   T     V  A ++P P S G  PP  P  PP
Sbjct: 166 PPPPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPPP 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,730
Number of Sequences: 59808
Number of extensions: 353040
Number of successful extensions: 1167
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)