Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o11f
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                31   0.011
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.075
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.5  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 42  THYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPH 146
           +H+  ++ AL      S G YP    F PP  +PH
Sbjct: 285 SHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPH 319


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 60   APALSNPIPDSVGAYP---PAKPFTPPGVYPHPEGV 158
            A A +N  P +    P   P KPFT PG  P P G+
Sbjct: 1109 AAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGI 1144


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 323 AHTFNCWVDLLDHYSLFTML 382
           +H  + WV+LL H++   ++
Sbjct: 152 SHQTDVWVELLKHFNYMKVI 171


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
 Frame = +3

Query: 12  PPPYSS-----VVGTTHYGFVAP 65
           PPP +      +VG + YGFV P
Sbjct: 55  PPPNNEDSSGVIVGASGYGFVPP 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,003
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)