Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o10r
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.44 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.6  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 165 MRPSIL-RVYFFFSFVAD*SFTYIYFWHE 248
           M+P  L RV FFFSF     F Y+Y W +
Sbjct: 1   MKPGELKRVLFFFSFCCILFFIYLY-WQQ 28


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 391 YRLRLVHHYGSTKVVRRSLRGKY 459
           Y  +L+ H+G+TKV     R  Y
Sbjct: 135 YHHQLLGHFGATKVYNSMKREYY 157


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 408 TPLRFNKSGPPESPRQIPTPPAP 476
           TPL  + +  PE   +IP  P P
Sbjct: 70  TPLPSDGTTSPEPDPEIPVAPEP 92


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 521 GHALLHCDHLQVHLAHHLIYRDTSLR 598
           G+     DH+  +L  H+IY    L+
Sbjct: 39  GNGRFTVDHIDPYLCTHIIYSFVGLQ 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,934
Number of Sequences: 336
Number of extensions: 3578
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)