Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o10r
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   5.9  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   7.9  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 502 VRNSNICTNGAGGVGICRGDSGGPLLLNRNGVLTLIGISSFVAQNRCQDG 353
           ++ +NI  + +G V +C       L +NR   +T IG   ++A    +DG
Sbjct: 134 IKAANILVSMSGNVKLCDFGVAAELNINRRKRITFIGTPYWMAPEVIRDG 183


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 375  ATKELIPIKVSTP-LRFNKSGPPESPRQIPTP 467
            +T   +PI  STP +  + SG P +P  +P P
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 465 PPAPFVQMFEFLTKLLPKTAM 527
           PP P VQ FEF    LP  AM
Sbjct: 189 PPFPMVQGFEFWISKLPYLAM 209


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 480 VQMFEFLTKLLPKTAMHCCT 539
           + +++FL K++ KT M+C T
Sbjct: 860 ISLYDFLHKIMKKTNMNCLT 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,534
Number of Sequences: 5004
Number of extensions: 56198
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)