Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o10r
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 30 1.5
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 29 4.6
08_02_0410 - 16842306-16842950,16844994-16845182 29 4.6
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 29 4.6
11_06_0610 - 25449085-25453284 28 6.1
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 28 6.1
06_01_0684 + 5008881-5009504 28 6.1
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 8.1
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 28 8.1
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 28 8.1
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +3
Query: 306 RMKLLKLVTLAKADGNPSWHLFWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 476
R+ L L LA A GNPS F + + + L F+ PP P P PPAP
Sbjct: 15 RLPHLALALLAVASGNPSLGGF--DRGDAEAEAYSILTFHDYTPPPPPSLPPPPPAP 69
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 NPSWHL-FWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 476
NP+ L F T + +P + L + S PP SP P PPAP
Sbjct: 145 NPASFLPFLQTSKWLPC---SDLATSSSAPPSSPSPSPPPPAP 184
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 487 ICTNGAGGVGIC--RGDSGGPLLLNRNG 410
+C GAGGVG+C G+ GG + G
Sbjct: 207 VCGGGAGGVGVCARSGEGGGGWRAKKGG 234
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 393 PIKVSTPLRFNKSGPPESPRQIPTPPAP 476
PI + P + PP+ +Q P PPAP
Sbjct: 263 PIPATRPAPAARPAPPKPEKQSPAPPAP 290
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 393 PIKVSTPLRFNKSGPPESPRQIPTPP 470
P+ VS+P KS PP +P +P PP
Sbjct: 1139 PVPVSSPPPPEKSPPPPAPVILPPPP 1164
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 402 VSTPLRFNKSGPPESPRQIPTPPAP 476
VS P K PP SP +PT PAP
Sbjct: 36 VSAPKPKAKPPPPPSPPPLPTAPAP 60
>06_01_0684 + 5008881-5009504
Length = 207
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 419 VQQKWSAGVSAANTDTASSVRADV*VPHEVATENGHALL 535
+++ ++ VS AN +A + AD+ VP +VATE ++
Sbjct: 102 LREVYAFAVSHANRPSAEAAPADIVVPAQVATEESDGVV 140
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 384 ELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 476
E PI V P + PP P Q+P PP P
Sbjct: 2 EATPISVKPPSPV-AAAPPPPPVQVPVPPPP 31
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 358 DGFPSAFARVTSFNNFIRQHL 296
DGF SAF SFN I+ HL
Sbjct: 370 DGFASAFQNQLSFNKMIQTHL 390
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 339 KADGNPSWHLFWATKELIPIKVSTPLRFNKSG 434
+A G P W F KE++ ++ PLR NK G
Sbjct: 252 EAYGTPLWRRF---KEMVELRFGPPLRHNKLG 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,347
Number of Sequences: 37544
Number of extensions: 374068
Number of successful extensions: 1531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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