Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o10r
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    37   2e-04
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = -3

Query: 646 FVGQWAVAAGYGLTSDAQTGISVNQVMSQVNLQVITVQQCMAVFGSNFVRNSNICTNGAG 467
           F G      G+G TS    G+ ++ ++ +  L ++T  +C   +G N + N+ +C   A 
Sbjct: 287 FAGSDVTVLGWGHTSF--NGM-LSHILQKTTLNMLTQVECYKYYG-NIMVNA-MCAY-AK 340

Query: 466 GVGICRGDSGGPLLLN--RNGVLTLIGISSFVAQNRCQDGFPSAFARVTSFNNFI 308
           G   C+ DSGGP+L    R   L  IGI S+ A+  C   +P+   +V S+ ++I
Sbjct: 341 GKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAE--C-GKYPNGNTKVGSYIDWI 392


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 311 EIVETCNSGEGRWESVLASVLG 376
           E +  C  G G W S +A ++G
Sbjct: 3   EKLRICIVGSGNWGSTIAKIIG 24


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 637 QWAVAAGYGLTSDAQTGISVNQVMSQVNL 551
           QW  +   G +S + T + VN+    VNL
Sbjct: 421 QWDDSVSAGFSSSSNTWLRVNENYKTVNL 449


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 637 QWAVAAGYGLTSDAQTGISVNQVMSQVNL 551
           QW  +   G +S + T + VN+    VNL
Sbjct: 421 QWDDSVSAGFSSSSNTWLRVNENYKTVNL 449


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 357 SWHLFWATKELIPIKVS 407
           SW  FW   E IP +V+
Sbjct: 231 SWIAFWIKPEAIPARVT 247


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 407  YTITVQQKWSAGVSAANTDTASSVRADV*VPHEVATENGHALLHCDHLQVHLAH 568
            YT+TVQ   SA V    + T+SS+     + H  +  NG A L    L    AH
Sbjct: 1397 YTLTVQVPPSAPVLYVTSSTSSSI-----LLHWKSGHNGGASLTGYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 407  YTITVQQKWSAGVSAANTDTASSVRADV*VPHEVATENGHALLHCDHLQVHLAH 568
            YT+TVQ   SA V    + T+SS+     + H  +  NG A L    L    AH
Sbjct: 1393 YTLTVQVPPSAPVLYVTSSTSSSI-----LLHWKSGHNGGASLTGYTLHYRTAH 1441


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 357 SWHLFWATKELIPIKVS 407
           SW  FW  +  +P +VS
Sbjct: 259 SWVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 357 SWHLFWATKELIPIKVS 407
           SW  FW  +  +P +VS
Sbjct: 259 SWVSFWLDQSAVPARVS 275


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 144 IITSKKIMRPSILRVYFFFSFVAD*SFTYIY 236
           +I   K++    LR +FF   ++     YI+
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 144 IITSKKIMRPSILRVYFFFSFVAD*SFTYIY 236
           +I   K++    LR +FF   ++     YI+
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 144 IITSKKIMRPSILRVYFFFSFVAD*SFTYIY 236
           +I   K++    LR +FF   ++     YI+
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,395
Number of Sequences: 438
Number of extensions: 4307
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)