Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o10r
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    29   3.9  
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    29   3.9  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    28   5.1  
At5g60660.1 68418.m07613 major intrinsic family protein / MIP fa...    28   6.8  
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family...    27   8.9  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    27   8.9  

>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 IPIKVSTPLRFNKSGPPESPRQIPTPPAP 476
           + + ++ P +  K+ PP  P  +P PP+P
Sbjct: 9   VKVLITKPFKKPKNRPPSPPPPLPLPPSP 37


>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 429 SGPPESPRQIPTPPAPFVQMFEF--LTKLLPKTAMHCCTVI 545
           SGP ++PR++P  P   + + +F  L  ++ +T    C V+
Sbjct: 151 SGPVKAPRKVPRSPYKILDLVDFRSLVSIMHETICDLCDVL 191


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
           serine/threonine phosphoesterase family protein contains
           Pfam profiles: PF00149 calcineurin-like phosphoesterase,
           PF01344 kelch motif
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 393 PIKVSTPLRFNKSGPPESPRQIPTPP 470
           P++  TP + N   PP     +PTPP
Sbjct: 28  PMERETPQQMNDQSPPPEGGSVPTPP 53


>At5g60660.1 68418.m07613 major intrinsic family protein / MIP
           family protein similar to mipC protein GI:1657948 from
           [Mesembryanthemum crystallinum]
          Length = 291

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 414 LRFNKSGPPESPRQIPTPPAPFVQMFE 494
           L  N+SGPP +      PPAPF  M E
Sbjct: 5   LDVNESGPPAARDYKDPPPAPFFDMEE 31


>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
           protein 
          Length = 426

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 375 ATKELIPIKVSTPLRFNKSGPPESPRQIPTPP 470
           A   L+P  ++ P  +    P E PR +P PP
Sbjct: 325 AIHNLLPPNIAVPSGWKPGMPVELPRDLPLPP 356


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 393 PIKVSTPLRFNKSGPPESPRQIPTPPAP 476
           P    +P  F   GP ESP   P PP P
Sbjct: 96  PWPAPSPSPFPNGGPIESPAYPPAPPRP 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,959
Number of Sequences: 28952
Number of extensions: 293801
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)