Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o10f
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67000.1 68414.m07618 protein kinase family protein contains ...    29   2.1  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    27   6.4  
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    27   8.5  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    27   8.5  

>At1g67000.1 68414.m07618 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 717

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 203 RHQTHILIWLVFSSPS*TPSVLRRVDHRFFQLTG*SPPPTAGL--MAASKLTSSLWFSAQ 376
           R  T + +W + SSPS  P + + V+     L     PP   L  ++AS ++ S W S +
Sbjct: 637 RKMTLVGLWCIQSSPSDRPPMNKVVEMMEGSLDALEVPPRPVLQQISASSVSDSFWNSEE 696

Query: 377 TRCSTVVFV 403
           +  ++ + V
Sbjct: 697 SSSASDILV 705


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  ENVGIPLAKSIRAAETAKLDSSVQPDNAARIVGGAISPSN 213
           EN G     ++  AET    SSVQPD+    +   IS +N
Sbjct: 582 ENNGSETDNALTVAETMDDGSSVQPDSITNSLHSCISDTN 621


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 94  RGRRSPPAHRLMCSPRR 44
           RGRRSPP  R +  PRR
Sbjct: 136 RGRRSPPRRRSVTPPRR 152


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 94  RGRRSPPAHRLMCSPRR 44
           RGRRSPP  R +  PRR
Sbjct: 136 RGRRSPPRRRSVTPPRR 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,644,687
Number of Sequences: 28952
Number of extensions: 267925
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)