Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o08r
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 183 1e-47
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 183 1e-47
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 29 0.46
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 29 0.46
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.6
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 5.6
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 24 9.8
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 24 9.8
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 183 bits (446), Expect = 1e-47
Identities = 83/135 (61%), Positives = 107/135 (79%)
Frame = -2
Query: 453 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 274
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 93 GDIVTIGECRPLSKT 49
GD+VT+G+CRPLSKT
Sbjct: 117 GDVVTVGQCRPLSKT 131
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 183 bits (446), Expect = 1e-47
Identities = 83/135 (61%), Positives = 107/135 (79%)
Frame = -2
Query: 453 LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 274
+++++ Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 93 GDIVTIGECRPLSKT 49
GD+VT+G+CRPLSKT
Sbjct: 117 GDVVTVGQCRPLSKT 131
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 28.7 bits (61), Expect = 0.46
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -2
Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 58
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 57 SKT 49
S T
Sbjct: 64 SAT 66
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 28.7 bits (61), Expect = 0.46
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 13 LPFETFKTLNLTGFGQRSAFADRYNITNLHVPE--ARRQMYGHVPV 144
+P + KT+ TG GQ + + RY+ +P+ R+ Y H V
Sbjct: 561 IPKQFLKTIKRTGLGQFAFYEIRYDADGKEIPDFVLNREPYRHATV 606
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 300 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 398
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 417 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 241
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 240 TGV 232
TGV
Sbjct: 222 TGV 224
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 387 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 301
R G D++ +N+G+ F+TP + G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 22 ETFKTLNLTGFGQRSAFADRYNITNLHVPEARRQMY 129
E+ K + L GF S F D N H P R Y
Sbjct: 49 ESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKY 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,663
Number of Sequences: 5004
Number of extensions: 37457
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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