Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o08r
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             209   1e-54
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         29   1.4  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   3.3  
SB_35853| Best HMM Match : TP2 (HMM E-Value=6.5)                       28   4.3  
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         28   4.3  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   4.3  
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  27   5.7  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   5.7  
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  209 bits (510), Expect = 1e-54
 Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 16/159 (10%)
 Frame = -2

Query: 441 MADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 310
           MA+QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 309 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 130
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 129 VHLSPCFRDVEIGDIVTIGECRPLSKTS*IQCFESFKGQ 13
            H SPCFRD+ +GD++T+G+CRPLSKT      +  KG+
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKVSKGK 159



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3

Query: 53  KPVRFNVLKVSKGKGS 6
           K VRFNVLKVSKGK +
Sbjct: 146 KTVRFNVLKVSKGKST 161


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 93  GDIVTIGECRPLSKT 49
           GD V I E RPLS T
Sbjct: 63  GDRVRIMETRPLSAT 77


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 291 QCRYPQSPLWEF*SLNQHSYGDACP 365
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 423 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 247
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 246 ILTGVVQK 223
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_35853| Best HMM Match : TP2 (HMM E-Value=6.5)
          Length = 133

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 10  PLPFETFKTLNLT-GFGQRSAFADRYN 87
           P+ ++TFK   +T G+G+RS  + RYN
Sbjct: 96  PINYQTFKRSLMTRGYGKRSTSSTRYN 122


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 93 GDIVTIGECRPLSK 52
          GD+V I ECRPLSK
Sbjct: 29 GDVVRIKECRPLSK 42


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 246 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 109
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 336 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 446
           N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 33  NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 72


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 80   RSANADLCPKPVRFNVLKV-SKGK 12
            R A+  +CPKP R N++ + SKG+
Sbjct: 1105 RMASIKICPKPTRVNIVMIDSKGE 1128


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 336  NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 446
            N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 1369


>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -2

Query: 177 YLPKYNRFE--KRHRNMSVHLSPCF 109
           Y  K++RF    ++RN S+H+SP F
Sbjct: 33  YSSKFHRFNIFHKYRNFSLHISPVF 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,783,021
Number of Sequences: 59808
Number of extensions: 303298
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)