Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o08r
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   186   5e-48
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           181   2e-46
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           177   2e-45
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    38   0.004
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.008
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.50 
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    29   2.0  
At4g26980.1 68417.m03882 expressed protein                             27   4.7  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   4.7  
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos...    27   8.2  
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos...    27   8.2  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   8.2  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  186 bits (454), Expect = 5e-48
 Identities = 91/136 (66%), Positives = 105/136 (77%), Gaps = 5/136 (3%)
 Frame = -2

Query: 441 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKT 49
            GD VTIG+CRPLSKT
Sbjct: 120 EGDRVTIGQCRPLSKT 135


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  181 bits (441), Expect = 2e-46
 Identities = 87/136 (63%), Positives = 102/136 (75%), Gaps = 5/136 (3%)
 Frame = -2

Query: 441 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKT 49
            GD + IG+CRPLSKT
Sbjct: 120 EGDHIIIGQCRPLSKT 135


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  177 bits (432), Expect = 2e-45
 Identities = 88/136 (64%), Positives = 102/136 (75%), Gaps = 5/136 (3%)
 Frame = -2

Query: 441 MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 277
           MA+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 276 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 97
           FTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 96  IGDIVTIGECRPLSKT 49
            GD V IG+CRPLSKT
Sbjct: 120 EGDHVIIGQCRPLSKT 135


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 61
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 60  LSK 52
           LSK
Sbjct: 63  LSK 65


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -2

Query: 249 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 70
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 69  CRPLSK 52
            RPLSK
Sbjct: 60  SRPLSK 65


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 396 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 268
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 249 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 70
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 69  CRPLSKT 49
            RP+SKT
Sbjct: 109 SRPISKT 115


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 327 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 223
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 252 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 136
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At5g50640.1 68418.m06274 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 439 GGSDRESVSETGHRFPEQERWHEEEG 362
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g50530.1 68418.m06258 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 439 GGSDRESVSETGHRFPEQERWHEEEG 362
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 229  SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 104
            S+ EDA    DP  +P++   I+    T +EH+   + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,352,296
Number of Sequences: 28952
Number of extensions: 208597
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)