Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o08f
         (503 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   243   2e-64
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       243   2e-64
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       243   2e-64
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   243   2e-64
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   142   6e-34
BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sortin...    29   7.0  
BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sortin...    29   7.0  
BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sortin...    29   7.0  

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  243 bits (595), Expect = 2e-64
 Identities = 116/145 (80%), Positives = 130/145 (89%), Gaps = 6/145 (4%)
 Frame = +2

Query: 23  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 184
           MAD QTE+A+QKQ T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 185 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 364
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 365 EIGDIVTIGECRPLSKTVRFNVLKV 439
           +IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKV 145


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  142 bits (344), Expect = 6e-34
 Identities = 64/70 (91%), Positives = 68/70 (97%)
 Frame = +2

Query: 230 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 409
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 410 KTVRFNVLKV 439
           KTVRFNVLKV
Sbjct: 61  KTVRFNVLKV 70


>BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 112
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 112
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   FSLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 112
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,207,707
Number of Sequences: 237096
Number of extensions: 1422064
Number of successful extensions: 2639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2630
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)