Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o08f
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   202   1e-52
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           196   5e-51
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           193   7e-50
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.33 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.58 
At4g26980.1 68417.m03882 expressed protein                             27   5.4  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.4  
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos...    27   9.5  
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos...    27   9.5  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   9.5  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  202 bits (492), Expect = 1e-52
 Identities = 99/144 (68%), Positives = 113/144 (78%), Gaps = 5/144 (3%)
 Frame = +2

Query: 23  MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 187
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 188 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 367
           FTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119

Query: 368 IGDIVTIGECRPLSKTVRFNVLKV 439
            GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  196 bits (479), Expect = 5e-51
 Identities = 95/144 (65%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
 Frame = +2

Query: 23  MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 187
           MA+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 188 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 367
           FTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 368 IGDIVTIGECRPLSKTVRFNVLKV 439
            GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  193 bits (470), Expect = 7e-50
 Identities = 96/144 (66%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
 Frame = +2

Query: 23  MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 187
           MA+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 188 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 367
           FTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119

Query: 368 IGDIVTIGECRPLSKTVRFNVLKV 439
            GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 227 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 403
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 404 LSKTVRFNVLKV 439
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +2

Query: 215 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 394
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 395 CRPLSK 412
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +2

Query: 215 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 394
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 395 CRPLSKTVRFNVLKV 439
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 68  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 196
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 137 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 241
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 212 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 328
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At5g50640.1 68418.m06274 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 25  GGSDRESVSETGHRFPEQERWHEEEG 102
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g50530.1 68418.m06258 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 25  GGSDRESVSETGHRFPEQERWHEEEG 102
           GG  R+S+S +GH F  +++  E EG
Sbjct: 5   GGPSRKSLSFSGHSFQGRKKASENEG 30


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 235  SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 360
            S+ EDA    DP  +P++   I+    T +EH+   + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,392
Number of Sequences: 28952
Number of extensions: 213502
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)