Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o07r
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     73   4e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    71   1e-13
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   0.24 
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     27   2.2  
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    26   5.1  
11_06_0129 - 20397179-20397537,20397749-20400497                       26   6.7  
05_07_0144 - 28007477-28008412                                         26   6.7  
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715...    25   8.9  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 37/75 (49%), Positives = 48/75 (64%)
 Frame = -3

Query: 260 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 81
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 80  RMGESDDCIVRLTKK 36
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 36/75 (48%), Positives = 47/75 (62%)
 Frame = -3

Query: 260 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 81
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 80  RMGESDDCIVRLTKK 36
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 268 HIKCRTTPVNSLTCTARGNARPATASST 185
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 281 PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 189
           P G+  + Q D G  ++L  CP +CS + +L+
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286


>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 266 YKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCG 90
           YK  +D  +  DL+ P +C  + + IH KD   V L   DV  A    AA  +   +V G
Sbjct: 82  YKQPSDP-QMKDLFLPFRCFCTRKDIHCKD---VVLDDHDVSKAIVEFAAHAAIEKLVVG 137

Query: 89  AIRRMG 72
           A  R G
Sbjct: 138 ATARGG 143


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 AGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFC 258
           AGS+S+  +  +  +L   + +L+   LG   S NS + FC
Sbjct: 20  AGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60


>05_07_0144 - 28007477-28008412
          Length = 311

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 16  FLASIPSFFVNLTMQSSDSP---ILRIAPQTTYILDVSAARPVAGSTSAITSCTE 171
           F   +   F++L+  SS SP     ++APQTT I   ++A  V  STSA  +  E
Sbjct: 29  FREEVAPGFLSLS-PSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSASGTTAE 82


>06_02_0322 +
           14369221-14369540,14370240-14370918,14371347-14371573,
           14372121-14372312,14372394-14372550,14373860-14374093
          Length = 602

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 230 LYCPRKCSASNRLIHAKDHASVQLVIADVDPA 135
           + C R  +ASN     K HAS    ++DVD A
Sbjct: 158 ILCVRSGTASNPADSGKVHASHGFYVSDVDAA 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,727
Number of Sequences: 37544
Number of extensions: 162374
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)