Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o07r
(307 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10) 26 5.3
SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3) 26 5.3
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.3
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.3
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 26 5.3
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 26 7.0
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35) 26 7.0
SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 25 9.2
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27) 25 9.2
SB_10302| Best HMM Match : VDE (HMM E-Value=4.4) 25 9.2
SB_1333| Best HMM Match : IncA (HMM E-Value=0.32) 25 9.2
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 197 GCWPSISSGSTSQRIHRRRSAFYMYVHT 280
G W + + S R+H+RR+A ++Y T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 31 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 159
P V ++ Q +P + +AP+TT + + + A T T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438
>SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)
Length = 476
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 203 WPSISSGSTSQR---IHRRRSAFYMYVHTVHGIDRCE 304
W ++ G S R IHRR +++ IDRC+
Sbjct: 62 WRDLAQGKRSSRGDYIHRRLDYLFLFDDLQSSIDRCD 98
>SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)
Length = 214
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = -3
Query: 287 RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 126
RV CG+TY +ND D Y S S +R IH + S Q ++ A +
Sbjct: 43 RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 101
Query: 125 AADTSKMYVVCGAIRRMGESDDCIV 51
AA++ VVC +S+D ++
Sbjct: 102 AANSC---VVCNTTLNQDDSEDDMI 123
>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = -3
Query: 287 RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 126
RV CG+TY +ND D Y S S +R IH + S Q ++ A +
Sbjct: 1575 RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 1633
Query: 125 AADTSKMYVVCGAIRRMGESDDCIV 51
AA++ VVC +S+D ++
Sbjct: 1634 AANSC---VVCNTTLNQDDSEDDMI 1655
>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 197 RLIHAKDHASVQLVIADVDPATGR 126
R+ H +HA Q++ A +DP TG+
Sbjct: 44 RVHHGINHAKSQILTAKLDPLTGK 67
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 49 LTMQSSDSPILRIAPQTTYILDVSAA 126
+T +++ +P +AP+TT +L+ SAA
Sbjct: 7 VTAETTAAPETTVAPETTAVLETSAA 32
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 161 LVIADVDPATGRAADTSKMYVVCGAI 84
L++AD+ P T +Y++C I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274
>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
Length = 473
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 280 RVDVHIKCRTTPVNSLTCTARGNARPATAS-STLRT 176
+V VHIK RT P S T + NAR ++ S L+T
Sbjct: 6 QVTVHIKKRTEPQESDQKTKKNNARGSSRGYSGLKT 41
>SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 257 AFYMYVHTVHGIDRCES 307
AFY+ +HTV G+D+ E+
Sbjct: 293 AFYLEMHTVAGVDQSET 309
>SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 257 AFYMYVHTVHGIDRCES 307
AFY+ +HTV G+D+ E+
Sbjct: 54 AFYLEMHTVAGVDQSET 70
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -3
Query: 194 LIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 15
++ +H Q++ A +DP TG K+ +V I + + L KDG A+N
Sbjct: 520 IVETINHVKSQILTAKLDPLTG------KIVLVSTGIVFLNAELCALFGLEAKDGDFAEN 573
Query: 14 Y*HL 3
HL
Sbjct: 574 RGHL 577
>SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 254 NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADV-DPATGRAADTS 111
+D+ EF D CS + + D S V AD+ DPA+ + + T+
Sbjct: 11 SDSDEFFDAVSDIACSLPDEMPSDSDEESEVYVPADITDPASDQESTTT 59
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 36 FLC*PHDAIIRLSHPSDSPTD 98
FLC H AI +HPS P D
Sbjct: 69 FLCHTHAAITGKAHPSGRPPD 89
>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
Length = 560
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 179 DHASVQLVIADVDPATGRAADTSKMYVVCGA 87
+HA Q++ A +DP TG+ SK V A
Sbjct: 341 NHAKSQILTAKLDPLTGKIVLVSKGIVFLNA 371
>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
Length = 578
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 254 NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADV-DPATGRAADTS 111
+D+ EF D CS + + D S V AD+ DPA+ + + T+
Sbjct: 424 SDSDEFFDAVSDIACSLPDEMPSDSDEESEVYVPADITDPASDQESTTT 472
>SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 302
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 212 CSASNRLIHAKD--HASVQLVIADVDPATG 129
C A + +H D HA Q++ A +DP TG
Sbjct: 38 CRAPHGRVHRGDDHHAKSQILTAKLDPLTG 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,173
Number of Sequences: 59808
Number of extensions: 179604
Number of successful extensions: 609
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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