Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o07r
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   5e-26
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    29   0.85 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    29   0.85 
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     27   3.4  
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso...    27   3.4  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    27   3.4  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    27   3.4  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    27   3.4  
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.     27   3.4  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical p...    25   7.9  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (269), Expect = 5e-26
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = -3

Query: 260 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 84
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 83  RRMGESDDCIVRLTKKDGILAKN 15
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 91  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 270
           PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 271 RPH 279
           +P+
Sbjct: 852 QPY 854


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 91  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 270
           PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 271 RPH 279
           +P+
Sbjct: 852 QPY 854


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -3

Query: 305 FRICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVI 153
           F +C   +   RTY + N+ G  V++Y       +NR      H  +++ +
Sbjct: 408 FILCFAILSASRTYSIHNNYGSHVEIYRSLNAELTNRTNFKNFHDPIRVCV 458


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 146 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 30
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 175 WSLAWMRRLLAEHFLGQYKS 234
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
           ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 877


>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform b
           protein.
          Length = 4203

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
           ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform a protein.
          Length = 4488

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274  DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
            ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform d protein.
          Length = 4369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274  DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
            ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform c protein.
          Length = 4447

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274  DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
            ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115


>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
          Length = 4219

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 274 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 164
           ++H+  R TPVN  T       N RP    S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 63   IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 158
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 63   IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 158
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 167
           +H+  ++   N + C A+    P  AS  L  MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 167
           +H+  ++   N + C A+    P  AS  L  MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729


>U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical
           protein K09H11.11 protein.
          Length = 121

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 207 GQQPPHPR*GPCF 169
           GQQPPHP+  P F
Sbjct: 19  GQQPPHPQIDPLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,325,726
Number of Sequences: 27780
Number of extensions: 130015
Number of successful extensions: 407
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)