Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o06r
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0382 - 5076673-5077774,5078122-5078186                           31   0.63 
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    28   4.5  
05_01_0234 - 1743784-1744017,1748103-1749068                           28   5.9  
08_02_0324 - 15766862-15766871,15767041-15767741                       27   7.8  

>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 226 KVKPTPPPVRRTLVNCVDPRTRTALTRLP 312
           K  PTPPP RR  +N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
            16619577-16619848,16620528-16620633,16620715-16620872,
            16621527-16621714,16621786-16621855,16622814-16622984,
            16624363-16624838,16625625-16625871,16626158-16626490,
            16627329-16627412,16627751-16627843,16627966-16628025,
            16628582-16628680,16628830-16628970,16629207-16629287,
            16629895-16629966,16631160-16631231,16632083-16632176,
            16632257-16632339,16632455-16632532,16632914-16632970,
            16633055-16633132,16633236-16633357,16633463-16633623,
            16634419-16634495,16634570-16634683,16634857-16634958,
            16635368-16635436,16635437-16635577,16635936-16636109,
            16636934-16637063,16637137-16637276,16637369-16637446,
            16637813-16637911,16638408-16638803
          Length = 1749

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 241  PPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLI 354
            PP +  + +  V PRTRT+L+ LP   + L L T  L+
Sbjct: 1694 PPHIVSSAIEKVKPRTRTSLSMLP--LLRLLLPTTHLV 1729


>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 367 LTTKLRKSLSLEVILPILKALALSVDLGSATSL 465
           L  +LRKSL + +I P L+  ALSV+  +A  L
Sbjct: 225 LDVRLRKSLEIRLIPPELEVPALSVEEATAVLL 257


>08_02_0324 - 15766862-15766871,15767041-15767741
          Length = 236

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 500 LFVLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFVVSRAATINWRVLNV 330
           ++VL    +V T      R TD    + I      DR  RSF++S AAT +  +LN+
Sbjct: 45  VYVLERHNSVWTRYETTSRCTDLTAKIIISGFVVLDR--RSFMISDAATFDCLLLNI 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,110
Number of Sequences: 37544
Number of extensions: 250125
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)