Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o05r
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.4  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 118 TRSFCFFVCTKNSFSPFF 65
           T +FC   C  N  +PFF
Sbjct: 41  TNAFCLPFCGPNVINPFF 58


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 118 TRSFCFFVCTKNSFSPFF 65
           T +FC   C  N  +PFF
Sbjct: 40  TNAFCLPFCGPNVINPFF 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 267 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALS 431
           V  +  + L R PAG+V+      + +VA    T + K  ++     ILK +  S
Sbjct: 74  VHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 127 VNVQNMHFSVPKFVR 171
           +NV++M F V  FVR
Sbjct: 25  INVEDMDFRVDMFVR 39


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 360 AVLLQLTGG 334
           AVLLQLTGG
Sbjct: 94  AVLLQLTGG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,777
Number of Sequences: 438
Number of extensions: 2452
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)