Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o05f
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    30   1.2  
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   1.6  

>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 243 VNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNN 64
           + +  RTR L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  N
Sbjct: 786 MRICARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTN 845

Query: 63  RANFILQEI 37
           R +  L+++
Sbjct: 846 RKDKSLKDL 854


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,283
Number of Sequences: 27780
Number of extensions: 220941
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)