Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o04r
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.60 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   5.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +1

Query: 580 NIQELHTGDVAESASQNLILVEDNEG 657
           ++  L T +++E+ +QNL L++++EG
Sbjct: 499 DLSMLETNNLSETFTQNLSLMDESEG 524


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 434  WGRLKFFFCFDGVFHDPNK 490
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 280 RVRIEFQHRLVVSER 324
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 280 RVRIEFQHRLVVSER 324
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 512 PHSAGLTPYSGHGRHHQN 459
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 280 RVRIEFQHRLVVSER 324
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 435 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 262
           Q KM N       +S  +   +  P K VI++ R L P     ++L  N      KRK
Sbjct: 15  QNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +1

Query: 190 QLQSTLLGISKSLQVLPSAQL*DSFPLQHGRVRIEFQHR 306
           +L+     +SK + +   ++L ++  L   +++I FQ+R
Sbjct: 170 ELEKEFTFVSKYITIKRKSELAENLGLSERQIKIWFQNR 208


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 533 VSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNR 429
           +S SG +P+ +  +PY  +     +K   S C +R
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDR 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,573
Number of Sequences: 336
Number of extensions: 2470
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)