Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o04r
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                75   7e-14
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                29   3.6  
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      29   3.6  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/56 (62%), Positives = 39/56 (69%)
 Frame = -3

Query: 699 KGKMRNRRRIQRKGPLIIFNKDQVLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGR 532
           KGKMRNRR + RKGPLII+N DQ L +AFRN+PGVE           L PGGHLGR
Sbjct: 190 KGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 34/82 (41%), Positives = 43/82 (52%)
 Frame = -3

Query: 444 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 265
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 264 KAILELRRRKNLKALADAEKSG 199
             +L + RR+  K  A A+K G
Sbjct: 277 AEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 471 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 325
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 460 TKEELQPAPTEDGQH*PHTSSQV**DQEGPPCSQQTRDPCYTQIE--PAH*QQGDAETQS 287
           ++++  P P++  +H P  S Q    Q  P  SQQ R P  +Q +  P H QQ   ETQS
Sbjct: 206 SQQQRHPRPSQQQRH-PRPSQQ----QRYPRPSQQQRQPRPSQQQRYPRHNQQQTPETQS 260

Query: 286 LRGRAEEES 260
                E +S
Sbjct: 261 TTEIPETQS 269


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = -3

Query: 336 RKLNPLTNNK-----AMLKLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNP 175
           RK  P   NK     A   +  Y A  +R A  +E+RR++  K L   EK   +L  R  
Sbjct: 87  RKSAPFATNKDVRHQAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREA 144

Query: 174 AMKAEKLRERRR 139
           AM+ ++ +ER R
Sbjct: 145 AMEEKRQKERLR 156


>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 357 KRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSK 184
           K V R TR+ NPL   K + K  P+ +  K  +K        K    +   EK    L +
Sbjct: 369 KPVERQTRRFNPLVIPKKLQKDLPFKSKPKDAKKRQRPSLESKRAVVMEPQEKKVYSLMQ 428

Query: 183 RNPAMKAEKLRERRRK 136
           +      EKLR+R+ K
Sbjct: 429 QLYTANKEKLRKRKEK 444


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 396 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 292
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/99 (24%), Positives = 44/99 (44%)
 Frame = -3

Query: 453 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAV 274
           K  N  +P++  + L  L   D I +    PNK    +T + NP+     ++K  PY  +
Sbjct: 132 KQPNPSKPELVCSSLLSL--QDAINRAAVEPNKT---STTE-NPIERQSFLVKNRPYFTM 185

Query: 273 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 157
           L++    EL+++     L  +    +  S   PA  A++
Sbjct: 186 LRKSYDKELKKKAVFLCLIVSNPKKIDESCPKPASAADE 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,932
Number of Sequences: 59808
Number of extensions: 343861
Number of successful extensions: 1322
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)