Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o04r
         (701 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    28   0.25 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   4.0  
DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide...    23   9.3  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
 Frame = -3

Query: 483 GSWKTPSKQKKNFNLPQP------KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 322
           G  K P K+KK  +LP+P      K  N DL ++LK       L+    +V +  R  N 
Sbjct: 153 GQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLKGLTHDDALKDVGDQVAKVRRTQN- 211

Query: 321 LTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 142
             +   +LK    A  ++      L+ + N++ LA +    ++++  +    AE++ E  
Sbjct: 212 -GDMLLVLKRGKEAVRVEAGIKNALKDKANVRTLAPSVM--IEITHLDEITLAEEIAEAL 268

Query: 141 RKNI 130
           ++ +
Sbjct: 269 KQQL 272


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 482 PNKGSSLPNAD*VQMTKRPR*PPGA 556
           P  G   P    V M  RP+ PPGA
Sbjct: 212 PRPGGMYPQPPGVPMPMRPQMPPGA 236


>DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide F
           prepropeptide protein.
          Length = 234

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
 Frame = -3

Query: 507 FGRLDPLFGSWKTPSKQKKNFNLPQPKM------ANT--DLTRLLKSDEI--RKVLRAPN 358
           FGR DPL+ S+   +  ++NF    P        +N   +L    + D++  +K +RAP 
Sbjct: 101 FGRNDPLWTSFNENALLEENFEKRAPSQRLRWGRSNLFGNLVNQFQQDDVMQQKTIRAPQ 160

Query: 357 KRV 349
            R+
Sbjct: 161 LRL 163


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,543
Number of Sequences: 2352
Number of extensions: 10557
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)