Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o04r
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 164 4e-41
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 159 2e-39
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 35 0.045
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-... 31 0.74
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 29 3.9
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 29 3.9
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 28 5.2
At4g18150.1 68417.m02697 hypothetical protein 28 6.9
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 28 6.9
At2g46980.2 68415.m05869 expressed protein 28 6.9
At2g46980.1 68415.m05868 expressed protein 28 6.9
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami... 28 6.9
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind... 27 9.1
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 164 bits (399), Expect = 4e-41
Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 1/180 (0%)
Frame = -3
Query: 699 KGKMRNRRRIQRKGPLIIFNKD-QVLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVI 523
KGKMRNRR I RKGPL+++ + + +AFRN+PGVE LAPGGHLGRFVI
Sbjct: 198 KGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVI 257
Query: 522 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 343
WT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+ K R
Sbjct: 258 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKR 317
Query: 342 ATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKA 163
A K NPL N MLKLNPYA KR ++L +R K A+K + A+KA
Sbjct: 318 AVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKA 377
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 159 bits (386), Expect = 2e-39
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Frame = -3
Query: 699 KGKMRNRRRIQRKGPLIIFNKDQV-LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVI 523
KGKMRNRR I RKGPL++F + + +AFRN+PGVE LAPGGHLGRFVI
Sbjct: 199 KGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVI 258
Query: 522 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 343
WT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+ R
Sbjct: 259 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKR 318
Query: 342 ATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKA 163
A K NPL N M KLNPYA KR ++L R K +K + + A+KA
Sbjct: 319 AVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKA 378
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 35.1 bits (77), Expect = 0.045
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = -3
Query: 417 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYA-AVLKRKAILELRR 241
TDL KS+ I V ++ + RK NP+T ++ K +P A +L+R + +
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAFDPKD 291
Query: 240 RKN-LKALADAEKSGLKLSKRNPA----MKAEKLRERRR 139
R +ALAD GL +R P+ K E ERRR
Sbjct: 292 RPTPAEALADPYFKGLSKIEREPSSQQISKMEFEFERRR 330
>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
domain-containing protein weak similarity to SP|P45974
Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
{Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
domain
Length = 413
Score = 31.1 bits (67), Expect = 0.74
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = -3
Query: 462 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 283
K N N+ K A T LK+ E+R+ RA K+ K K +++
Sbjct: 162 KVPSNSNVGPAKPALTPEEVKLKAQELRE--RARKKK--EEEEKRMEREREKERIRIGK- 216
Query: 282 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLR-ERRRK 136
+L+ K + E+ RK L L AEK K ++ K E+ + ERRRK
Sbjct: 217 -ELLEAKRMEEVNERKRLMFLRKAEKEEEKRAREKIRQKLEEDKAERRRK 265
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 520 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQNLILVEDNEGSLTLDTTTVAHF 693
P+DET ++ +SQL+ ++ ++ Q+ + + E S+N ++ +D E DT ++++
Sbjct: 337 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNY 394
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 520 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQNLILVEDNEGSLTLDTTTVAHF 693
P+DET ++ +SQL+ ++ ++ Q+ + + E S+N ++ +D E DT ++++
Sbjct: 332 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNY 389
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 28.3 bits (60), Expect = 5.2
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = -3
Query: 468 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 289
P + K + QP + T ++ + + + K ++ + +TN + ++
Sbjct: 278 PYRDSKLTRILQPALGGNANTAIICNITLAPIHADETKSSLQFASRALRVTNCAHVNEIL 337
Query: 288 PYAAVLKR--KAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRER 145
AA+LKR K I ELR + +E+ L L RN +K+E RER
Sbjct: 338 TDAALLKRQKKEIEELRSKLKTSHSDHSEEEILNL--RNTLLKSELERER 385
>At4g18150.1 68417.m02697 hypothetical protein
Length = 762
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 505 ECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAESASQNL 633
EC ++PD+ +++ S+ E + ++ T D A+S ++N+
Sbjct: 43 ECDMNPDEAVNRLLSQDTFHEAKSKREKKKETKDHADSWTRNV 85
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 231 LKALADAEKSGLKLSKRNPAMKAEKLRERRRKNI 130
LKAL EK +S+R A +A +L ERRRK +
Sbjct: 1092 LKALLQVEKQRADISERKCA-EARELGERRRKRL 1124
>At2g46980.2 68415.m05869 expressed protein
Length = 516
Score = 27.9 bits (59), Expect = 6.9
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -3
Query: 474 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 295
+TP +K NF L Q K +N D L+K + ++ ATR+ P+T + +
Sbjct: 218 ETPEVEKTNFKLSQDKGSNDD--PLIKPRHNSDSIETDSESPENATRR--PVTRSLLQRR 273
Query: 294 LNPYAAVLKRKAILELRRR--KNLKALADAEKS--GLKLSKRNPAMKAEKLRERRRKNI 130
+ K KA L R+ + + ++ E+ G + N ++ +K R RR+ +
Sbjct: 274 VGAKGVQKKTKAGANLGRKCTEQVNSVFSFEEGLRGKIGTAVNSSVMPKKQRGRRKNTV 332
>At2g46980.1 68415.m05868 expressed protein
Length = 516
Score = 27.9 bits (59), Expect = 6.9
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -3
Query: 474 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 295
+TP +K NF L Q K +N D L+K + ++ ATR+ P+T + +
Sbjct: 218 ETPEVEKTNFKLSQDKGSNDD--PLIKPRHNSDSIETDSESPENATRR--PVTRSLLQRR 273
Query: 294 LNPYAAVLKRKAILELRRR--KNLKALADAEKS--GLKLSKRNPAMKAEKLRERRRKNI 130
+ K KA L R+ + + ++ E+ G + N ++ +K R RR+ +
Sbjct: 274 VGAKGVQKKTKAGANLGRKCTEQVNSVFSFEEGLRGKIGTAVNSSVMPKKQRGRRKNTV 332
>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
protein (FBX1) E3 ubiquitin ligase SCF complex F-box
subunit; almost identical to unusual floral organs
(UFO)GI:4376159 from [Arabidopsis thaliana]
Landsberg-erecta; one amino acid difference
Length = 442
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 30 RPFQLSASYLPSSWEEAGSS*QPASWVS 113
R ++LS +Y+PS + +GSS SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165
>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
cassette transporter ABC1, Homo sapiens, PIR2:A54774
Length = 947
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 215 SARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFN 331
S KFFLL + F F L SIA LL S F+
Sbjct: 423 SVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFS 461
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,988
Number of Sequences: 28952
Number of extensions: 242692
Number of successful extensions: 721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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