Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o04f
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 206 8e-54
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.096
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 2.1
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.7
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.7
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 4.8
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 4.8
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 6.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 8.4
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 8.4
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 27 8.4
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 27 8.4
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 206 bits (504), Expect = 8e-54
Identities = 96/157 (61%), Positives = 112/157 (71%)
Frame = +2
Query: 104 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 283
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 284 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 463
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119
Query: 464 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQ 574
ARGH IEKI E+PLV++D ++
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIE 156
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 392 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 279
HH CY H Y Y+ H H + + H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 377 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 270
Y +HP T+ YHH H + ++ ++P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 377 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 264
Y +HP T+ YH H + H ++P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 351 WVPPPRTRGIRATARPVPHD 292
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 392 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 300
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 401 TYVHHDTCYRRHPDRTYGYHHHGHA 327
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 281 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 397
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 200 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 325
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 427
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 171 GRGLAAPCTVSLFSEYTDTKGRATDRLI 88
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 194 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 316
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 296 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 427
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 396 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 292
RPP H + P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 392 HHDTCYRRHPDRTYGYHHH 336
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 239 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAP 409
SRQPY + GH G G P +RGG + G G G G R AP
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAP 163
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 398 YVHHDTCYRRHPDRTYGYHHHGH 330
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,140
Number of Sequences: 59808
Number of extensions: 396040
Number of successful extensions: 1261
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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