Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o03r
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 26 4.1
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 4.1
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 5.4
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 26 5.4
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.4
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 7.2
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 25 7.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.5
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +3
Query: 120 FFSSIW*HYRWNGTAMVIVALKKKKQSPAMFQNIFIFIYLQTHLISTFNYTICKNQHYCA 299
+FSS Y + G + ++ +++ +F N+ IY + + NY Q +
Sbjct: 249 YFSSRTLAYVFGGCMHSLETIEGEEEGECLFNNLKALIYSPDLSMDSSNYVQSVVQTSSS 308
Query: 300 FLNYKSSGRLRQDASQKLF*ILVIYKVLWFCSLNNNTFV 416
LNY S +L +AS F I ++ L ++TF+
Sbjct: 309 ILNY-SMKKLLYNAS---FAITSLFNALLILDPKSSTFI 343
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 576 SGLLLLNHFLPQEISRPSVWVIEVTFSPG 490
SGLLL+ H P P + ++ TFS G
Sbjct: 7 SGLLLVAHLAPSSAFNPLRFFLDDTFSSG 35
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 419 NKSI-NAILRLPNLKKYLFDQIERN 490
NK I ILR PNL+ Y F+ +++N
Sbjct: 341 NKEILETILRKPNLQTYFFEFLKKN 365
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 552 FLPQEISRPSVWVIEVTFSPGFLSIWSNKY 463
+LP+EI+ P WV +V PG L++ KY
Sbjct: 236 YLPEEIT-PE-WVRDVNDKPGLLALAMEKY 263
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 539 SCGKKWFNNNNPELDCRVSL 598
+CG ++FNN+N C V L
Sbjct: 141 ACGTRFFNNDNENTRCYVKL 160
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 203 SNVPKHIHFHLPSNTFNK 256
SNVP+HIH + N F K
Sbjct: 30 SNVPEHIHSKIGRNLFQK 47
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 194 TVASNVPKHIHFHLPSNTFNKY 259
T +S++P +I HLP + FN+Y
Sbjct: 10 TSSSSLPCYILRHLPFSNFNRY 31
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 115 GCVKMAFHCVLTRCFYFIAARVRLNRYPITDVL 17
GCV MAF L R +F+AA N PI + L
Sbjct: 114 GCVLMAFWMFLPRPIHFVAADDE-NGLPIPEPL 145
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 PPFFSSIW*HYRWNGTAMVIVALKKKKQSPAMFQNIFIFIYLQTHLISTF-NYTI 275
PP+ +W +Y + +V++ L K +N F+ ++ T +F N+ I
Sbjct: 1205 PPYREKVWRNYSFTAVVVVLLILTVKLIRLQNHKNFFMKLFQLTPTSKSFQNFLI 1259
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 497 EKVTSITHTEGREISCGKKWFNNNNPELDCRVSLTKTHHTGRSDTVVID 643
++ T +++ R S F N + + D V ++K H R DT+ D
Sbjct: 1320 DEQTPSKYSDNRVESSSDTVFENTDLKYDNNVQMSKVTHHVRHDTISTD 1368
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 179 IKKKKTVASNVPKHIHFHLPSNTFNKYF*LYH 274
+K + ++ H+HFHL F +F LYH
Sbjct: 133 LKNRAKSLLSIKSHVHFHL--IPFINFFLLYH 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,831
Number of Sequences: 5004
Number of extensions: 62206
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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