Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03r
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           29   2.4  
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701     28   5.6  
05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250...    28   5.6  
06_03_0585 - 22528082-22530100                                         28   7.4  
06_03_0580 + 22489184-22491202                                         28   7.4  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 616  GMVCLCQRYSTIKLRVIIIKPLLATRDFSALGV 518
            G++   +RY    L ++++  LLATRDF+ +G+
Sbjct: 1039 GLLDSLKRYFLPPLAIVLVLLLLATRDFTLIGI 1071


>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
          Length = 204

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 488 NPGEKVTSITHTEGREISCGKKWFNNNNPE 577
           NP E V      +GR+ +CG  WF+   P+
Sbjct: 174 NPKENVDIHMLNQGRDRTCGMGWFHARQPQ 203


>05_06_0257 +
           26723858-26724049,26724073-26724230,26724886-26725024,
           26725130-26725315,26727117-26727310,26728113-26728193,
           26728248-26728338,26728414-26728590
          Length = 405

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 HLISTFNYTICKNQHYCAFLNY 311
           H  ST+N ++CK   YC  L Y
Sbjct: 301 HHASTYNSSLCKLMEYCPLLTY 322


>06_03_0585 - 22528082-22530100
          Length = 672

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 165 LLCHSTDSVT-RLKRKMGVVLKWRFIAYSLDVFISLLPALD 46
           +  H  +S+  R KR++  + +W  + Y L+  +S +  LD
Sbjct: 558 MAAHGGESILLRRKRRVEFIQRWNLLTYKLEKVVSAMSRLD 598


>06_03_0580 + 22489184-22491202
          Length = 672

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 165 LLCHSTDSVT-RLKRKMGVVLKWRFIAYSLDVFISLLPALD 46
           +  H  +S+  R KR++  + +W  + Y L+  +S +  LD
Sbjct: 558 MAAHGGESILLRRKRRVEFIQRWNLLTYKLEKVVSAMSRLD 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,581
Number of Sequences: 37544
Number of extensions: 347790
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)