Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03r
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    30   1.4  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)                   28   7.6  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 132 LKRKMGVVLKWRFIAYSLDVFISLLPAL 49
           L   MGVVLKWR++A S  +F +LL  L
Sbjct: 189 LAYSMGVVLKWRWLACSGAIFPALLVVL 216


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 475 PNRKEPGRKSNFNYPHRGPR 534
           PN    GRKSN N PH GP+
Sbjct: 343 PNPPLNGRKSNPNPPHNGPK 362


>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 588 LQSSSGLLLLNHFLPQEISRPSVWVIEVTFSPG---FLSIWSNKYFFKLGSLKIAFI 427
           ++ SSG +  N+ +      P VW   V F+ G   FL+I    YF  +   K +FI
Sbjct: 67  VKPSSGAMYQNNVITAWHCEPRVWFFIVVFAGGFLFFLTIGCIVYFVLMSRRKSSFI 123


>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
          Length = 563

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134 LVTLSVEWHSNGDCCIKKKKT-VASNVPKHIHFHLP 238
           +VT +V +HSNGDCC    K  V   V ++++  +P
Sbjct: 328 VVTRTVCFHSNGDCCHSSVKVQVRKCVNQYVYKLVP 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,787,495
Number of Sequences: 59808
Number of extensions: 432312
Number of successful extensions: 1201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)