Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03r
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine re...    30   1.6  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    29   2.2  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    29   2.9  
U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    27   8.7  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    27   8.7  
U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF024503-8|AAG24090.2|  283|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 17  QHISDGIPVQSNAGSNEIKTSSEYAMKRHFNTTPIF 124
           +++S  +   S  G+N  + +S Y + +H N TP+F
Sbjct: 64  KYLSSNLASSSQLGNNIFEIASLYGLSKHLNRTPLF 99


>AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 58 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 219 CFGTLLATVFFFLMQQSPLLCHSTDSVTRLKRKMGVVLKWRFIAYSLDVFISLLPA 52
           C GTL   +FF L   +  +  ST+  T + R   + L   FI +S D+F   L A
Sbjct: 182 CIGTLTFILFFRLFIWNHFILRSTN--TAISRATKITLLDSFIIFSFDLFPVFLTA 235


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 416 QNKSINAILRLPNLKKYLFDQIERNP---GEKVTSITHTEGREISCGKKWFNNNN 571
           + K+    L+ P++KK LF+  E+NP    E +  I+   G        WFN  N
Sbjct: 81  KKKTDKVNLQRPDIKKALFEHFEKNPKPESESLQKISAQLGLTQQQVTGWFNRRN 135


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +2

Query: 23  ISDGIPVQSNAGSNEIKTSSEYAMKRHFNTTPIFLFNLVTLSVEWHSNGDC---CIKKKK 193
           +S  +  QS  G++  + +S   M R  N TPI           W S  +     I+K +
Sbjct: 25  LSSSLAAQSGLGNHLFEMASLLGMSRVLNRTPILFVEDKNYEGMWKSTKEAIPGLIEKFQ 84

Query: 194 TVASNVPKH 220
            V   VP H
Sbjct: 85  IVHGKVPSH 93


>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 174 VALKKKKQSPAMFQNIFIFIYLQT--HLISTFNYTI 275
           + +KKKK+   +F+N  I  YL+T   L+ TFN  I
Sbjct: 8   INIKKKKRKNDIFENSIISRYLETILSLVVTFNRVI 43


>Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical
           protein C03E10.1 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 156 GTAMVIVALKK-KKQSPAMFQNIFIF--IYLQTHLISTFNYTICKNQHY 293
           G   V V L+K  K + A+  ++F    IYL + L+  F Y   KN++Y
Sbjct: 124 GALCVFVYLQKIDKSAFALLSSVFAVSVIYLSSFLLEIFLYFSAKNRYY 172


>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 210 FQNIFIFIYLQTHLISTFNYTICKNQHYCAFLNYK 314
           + +I + ++L T++  T N+TI  +  + A LNYK
Sbjct: 204 YNSISLGLFLATYMFLTKNFTIIGSILFVAALNYK 238


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 14  NQHISDGIPVQSNAGSNEIKTSSEYAMKRHFNTTPIFLFNLVTLSVEWHSNGDCCIKKKK 193
           +QH +  IPVQ+   SN  K+ S     +H    P+   N  + S     +     ++ +
Sbjct: 585 SQHQTKSIPVQNYQSSNYNKSYSSQTTTQH-QPQPVAANNNYSTSYHTERSSTTTAQQPQ 643

Query: 194 TVASNVPKHIHFHLPSNT 247
           T+A   P++   H  +++
Sbjct: 644 TIALPPPQNNSSHTETHS 661


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 101 HFNTTPIFLFNLVT--LSVEWHSNGDCCIKKKKTVASNVPKHIHFHLPSNTFNKYF*LYH 274
           + N    +LF+L+   ++V++ S G   +KK +++AS   KH+   L  N F     ++ 
Sbjct: 85  YLNIWSNYLFSLLPALVAVQFVSLGLAFLKKHQSIASIARKHLISELGHNIFRACVTIWP 144

Query: 275 LQESALLC 298
           +   +L C
Sbjct: 145 IFTFSLFC 152


>U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical
           protein F09C12.8 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 481 RKEPGRKSNFNYPHRGPR 534
           R EPG   NF+YPH  PR
Sbjct: 151 RVEPGLFENFHYPHGVPR 168


>AF024503-8|AAG24090.2|  283|Caenorhabditis elegans Hypothetical
           protein F31F4.11 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 14  NQHISDGIPVQSNAGSNEIKTSSEYAMKRHFNTTPIF 124
           +Q++S  +      G++  + +S Y + +H N TP F
Sbjct: 52  SQYLSSNLASPCQLGNHIFELASLYGLSKHLNRTPAF 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,345
Number of Sequences: 27780
Number of extensions: 346330
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)