Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03r
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   1.9  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 475 PNRKEPGRKSNFNYPHRGPRN 537
           PN  +PGR+    +P +GP N
Sbjct: 24  PNVPQPGRRPFPTFPGQGPFN 44


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 475 PNRKEPGRKSNFNYPHRGPRN 537
           PN  +PGR+    +P +GP N
Sbjct: 10  PNVPQPGRRPFPTFPGQGPFN 30


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 312 CNLKTHSNADSCK 274
           CN+   S+ADSC+
Sbjct: 374 CNISPRSSADSCQ 386


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 643 VNDHCITAPGMVCLCQRYSTI 581
           +NDHC+T    V +    +TI
Sbjct: 819 INDHCVTTEQSVVVTNVTTTI 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,730
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)