Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03r
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62700.1 68414.m07077 no apical meristem (NAM) family protein...    32   0.38 
At4g00760.1 68417.m00106 two-component responsive regulator fami...    30   1.2  
At5g42090.1 68418.m05124 expressed protein                             29   3.5  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    28   4.7  
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    28   6.2  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    27   8.2  
At1g78640.1 68414.m09165 expressed protein ; expression supporte...    27   8.2  

>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 394

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 518 HTEGREISCGKKWFNNNNPELDCRVSL 598
           H   + + CG   FNNNNP L C+  L
Sbjct: 205 HHHQQTLPCGLNAFNNNNPNLQCKQEL 231


>At4g00760.1 68417.m00106 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 367

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 476 QIERNPGEKVTSITHTEGREISCGKKWFNNNNPELD 583
           QI+ NP EK  SITHT+       K   NNNN E++
Sbjct: 138 QIDINPPEKNHSITHTQSLGAELKK---NNNNSEVE 170


>At5g42090.1 68418.m05124 expressed protein
          Length = 439

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 515 THTEGREISCGKKWFNNNNPELD 583
           TH+   E+   K W +N+NP+LD
Sbjct: 46  THSGRLELDASKIWLSNSNPDLD 68


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 573 GLLLLNHFLPQEISRPSVWVIEVTFSPGFLSIWSNKY 463
           GL LLN FL ++ S P  W+I +   PGF S++   Y
Sbjct: 466 GLFLLN-FLIEDSSFPRGWIIVMELYPGF-SLYRGLY 500


>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 609 CVFVKDTLQSSSGLLLLNHFLPQEISRPSVWVIEV 505
           C+F    ++  SG  LLN F PQ +SR  VWV+ V
Sbjct: 135 CLF-SGCMREYSGSSLLNLFAPQLLSR-KVWVVVV 167


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 142 CYQIEEKNGGCVKMAFHCVLTRCFYFI 62
           CY+  EKNGGC      C+  +CF ++
Sbjct: 286 CYKPVEKNGGC--NLVRCICGQCFCWL 310


>At1g78640.1 68414.m09165 expressed protein ; expression supported
           by MPSS
          Length = 487

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 23  ISDGIPVQSNAGSNEIKTSSEYAMKRHFNTTPIFLFN 133
           I +GI V   A  ++  T  +   KRH  T+  ++FN
Sbjct: 195 IQEGIGVDVKAYDHDTYTEHDMVFKRHVKTSKSYVFN 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,674
Number of Sequences: 28952
Number of extensions: 307091
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)