Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   6.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   6.2  
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           21   8.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.2  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 RHKWNLIHSSLVND 455
           R KWNL+  +L +D
Sbjct: 159 RKKWNLLFKTLTHD 172


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 RHKWNLIHSSLVND 455
           R KWNL+  +L +D
Sbjct: 85  RKKWNLLFKTLTHD 98


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 139 RQRRNQTSMNEATRPMQSIPPIHPSN 62
           R+R+   S+NEA   ++   P  PS+
Sbjct: 4   RERQRTQSLNEAFASLRKSIPTMPSD 29


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 556 SRPSVWVIEVTFSSRVPF 609
           SRP  WV+       VPF
Sbjct: 131 SRPETWVLGREMCKAVPF 148


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 556 SRPSVWVIEVTFSSRVPF 609
           SRP  WV+       VPF
Sbjct: 131 SRPETWVLGREMCKAVPF 148


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 139 RQRRNQTSMNEATRPMQSIPPIHPSN 62
           R+R+   S+NEA   ++   P  PS+
Sbjct: 104 RERQRTQSLNEAFASLRKSIPTMPSD 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,136
Number of Sequences: 336
Number of extensions: 3461
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)