Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   3.7  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.7  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    26   4.9  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   4.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.6  

>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 405 SYVRHKWNLIHSSLVND 455
           SY+RH+W L H++ + D
Sbjct: 887 SYLRHEWELTHNTSLED 903


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 385 KW*FLEIRMLGISGISSILRWSMTT 459
           KW FL I  +G++ + ++L WS  T
Sbjct: 103 KWKFLFILNIGVTALITVLGWSQHT 127


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 514 SGLLLLNHFLPQEISRPSVWVIEVTFSS 597
           SGLLL+ H  P     P  + ++ TFSS
Sbjct: 7   SGLLLVAHLAPSSAFNPLRFFLDDTFSS 34


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 551 SCGKKWFNNNNPELDCRVSL 492
           +CG ++FNN+N    C V L
Sbjct: 141 ACGTRFFNNDNENTRCYVKL 160


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 596  EEKVTSITHTEGREISCGKKWFNNNNPELDCRVSLTKTHHTGRSDTVVID 447
            +++ T   +++ R  S     F N + + D  V ++K  H  R DT+  D
Sbjct: 1319 DDEQTPSKYSDNRVESSSDTVFENTDLKYDNNVQMSKVTHHVRHDTISTD 1368


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 187  RYCLEIM----MVLRIFAKSSILKKTIFSVISTSRQFTFCNIETKLNK 318
            RYCLEI+    +V +I  ++ I+     SVIS   QF   +I  ++ K
Sbjct: 866  RYCLEILSACAIVTKIREQARIIGIDFMSVISRGSQFKVESIMFRIAK 913


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 384 KMVIFRDSYVRHKWNLIHSSLVNDHCITAPGMVCL 488
           + VI  D   R +W      L+N  C + PG V L
Sbjct: 604 QQVISADPAKRREWESCVKRLLNGKCTSGPGYVQL 638


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 372 MVNLVAYESAHVFTSF--YLFIQFCFNVTKRELP*CRDH 262
           +V++++++  H+FTSF  Y+F+   +         C  H
Sbjct: 678 VVSIISFDPWHMFTSFVQYIFLSIMYTNVLNVYAFCNTH 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,883
Number of Sequences: 5004
Number of extensions: 55667
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)