Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           29   2.2  
03_01_0079 + 637010-637224,638226-638391,638498-638714,639422-63...    28   5.1  
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010...    27   8.9  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 474  GMVCLCQRYSTIKLRVIIIKPLLATRDFSALGV 572
            G++   +RY    L ++++  LLATRDF+ +G+
Sbjct: 1039 GLLDSLKRYFLPPLAIVLVLLLLATRDFTLIGI 1071


>03_01_0079 +
           637010-637224,638226-638391,638498-638714,639422-639582
          Length = 252

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 602 TREEKVTSITHTEGREISCGKKWFNNNNPELDC 504
           T EE+V        +  +    W+N NNPE DC
Sbjct: 99  TEEERVPYYNRLNKKRANMALAWYNENNPE-DC 130


>04_03_0793 +
           19699355-19699472,19700245-19700633,19700824-19701065,
           19701150-19701663
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 360 LSLPLKYTKMVIFRDSYVRHKWNLIHSSLVNDHCITAPGMVCLCQRYSTIKLRVIIIKPL 539
           L LP K  +++     Y+ HKW   + +   DH    P     C  Y   K     I PL
Sbjct: 122 LPLPFKSPRVMRSAIQYISHKWPFWNRTDGADHFFVVPHDFGACFHYQEEKAIERGILPL 181

Query: 540 L 542
           L
Sbjct: 182 L 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,466,374
Number of Sequences: 37544
Number of extensions: 304819
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)