Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   6.9  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    27   9.1  

>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 299  MLQNVNCLDVEITEKIVFFKIDDLAKILRTIIISKQYLQF 180
            +  ++N  DV++ +K +    DDLA I++ + +SK+ + F
Sbjct: 957  LFDSINQKDVQMVDKTI---TDDLADIMKELSVSKELVDF 993


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -3

Query: 509 DCRVSLTKTH---HTGRSDTVVIDQRRMDEIP 423
           DCR  L  T+   H G+  T ++ QRR+   P
Sbjct: 73  DCRKKLDSTNAASHDGKCHTTIVTQRRLSRCP 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,943
Number of Sequences: 59808
Number of extensions: 379710
Number of successful extensions: 770
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)