Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF434174-1|ABO26294.1|  866|Drosophila melanogaster AGO3 protein.      28   8.6  
EF211827-1|ABO27430.1|  867|Drosophila melanogaster Argonaute3 p...    28   8.6  
BT029147-1|ABJ17081.1|  306|Drosophila melanogaster RT01032p pro...    28   8.6  
AE014298-3037|AAF50894.1|  306|Drosophila melanogaster CG15455-P...    28   8.6  
AE014296-3774|ABI31274.1|  732|Drosophila melanogaster CG40300-P...    28   8.6  
AE014296-3773|ABI31275.1|  732|Drosophila melanogaster CG40300-P...    28   8.6  
AE014296-3772|EAA45981.2|  732|Drosophila melanogaster CG40300-P...    28   8.6  

>EF434174-1|ABO26294.1|  866|Drosophila melanogaster AGO3 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 QGSVEIKHL*MRLRDQCNLFPQFTQAISYLYC 46
           QG+V   H  + LRD CN  P   Q +SY  C
Sbjct: 792 QGTVTPTHY-VVLRDDCNYGPDIIQKLSYKLC 822


>EF211827-1|ABO27430.1|  867|Drosophila melanogaster Argonaute3
           protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 QGSVEIKHL*MRLRDQCNLFPQFTQAISYLYC 46
           QG+V   H  + LRD CN  P   Q +SY  C
Sbjct: 792 QGTVTPTHY-VVLRDDCNYGPDIIQKLSYKLC 822


>BT029147-1|ABJ17081.1|  306|Drosophila melanogaster RT01032p
           protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 196 NNIFSLQS*KPRECNNLITRQRRNQTSMNEATRPMQSIPPIHPSNIV 56
           NN  +  +      NN  T    N  + N  T+P+ + P + P N++
Sbjct: 61  NNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDTSPYLTPENLI 107


>AE014298-3037|AAF50894.1|  306|Drosophila melanogaster CG15455-PA
           protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 196 NNIFSLQS*KPRECNNLITRQRRNQTSMNEATRPMQSIPPIHPSNIV 56
           NN  +  +      NN  T    N  + N  T+P+ + P + P N++
Sbjct: 61  NNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDTSPYLTPENLI 107


>AE014296-3774|ABI31274.1|  732|Drosophila melanogaster CG40300-PC,
           isoform C protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 QGSVEIKHL*MRLRDQCNLFPQFTQAISYLYC 46
           QG+V   H  + LRD CN  P   Q +SY  C
Sbjct: 658 QGTVTPTHY-VVLRDDCNYGPDIIQKLSYKLC 688


>AE014296-3773|ABI31275.1|  732|Drosophila melanogaster CG40300-PB,
           isoform B protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 QGSVEIKHL*MRLRDQCNLFPQFTQAISYLYC 46
           QG+V   H  + LRD CN  P   Q +SY  C
Sbjct: 658 QGTVTPTHY-VVLRDDCNYGPDIIQKLSYKLC 688


>AE014296-3772|EAA45981.2|  732|Drosophila melanogaster CG40300-PA,
           isoform A protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 QGSVEIKHL*MRLRDQCNLFPQFTQAISYLYC 46
           QG+V   H  + LRD CN  P   Q +SY  C
Sbjct: 658 QGTVTPTHY-VVLRDDCNYGPDIIQKLSYKLC 688


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,850,400
Number of Sequences: 53049
Number of extensions: 552266
Number of successful extensions: 1334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)