Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    31   0.49 
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 484 HTIPGAVIQWSLTSEEWMRFHLCLTYESLKITILV 380
           H +PG + +  +   EWM +  CL YES+  T+LV
Sbjct: 124 HELPGGIEKVDIIISEWMGY--CLFYESMLNTVLV 156


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 403 IRM--LGISGISSILRWSMTTVSLRPVWCVFVKDTLQSSSGLL 525
           IRM  LG S   ++  W+ T +S+R +W     D  + SSG++
Sbjct: 715 IRMPKLGASSPGALEPWTTTIISMRRIWGKETDDGFEESSGMI 757


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 403 IRM--LGISGISSILRWSMTTVSLRPVWCVFVKDTLQSSSGLL 525
           IRM  LG S   ++  W+ T +S+R +W     D  + SSG++
Sbjct: 715 IRMPKLGASSPGALEPWTTTIISMRRIWGKETDDGFEESSGMI 757


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 163 EVFSSVN*RYCLEIMMVLRIFAKSSILKKTIFSVISTSRQFTFCNIETK 309
           EV  +V  +YC ++ ++ ++F    I  KT++  + T + +  C I T+
Sbjct: 406 EVDGAVQKKYCQDLCLISKLF----IASKTLYDEVETFKFYVLCEITTE 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,205
Number of Sequences: 27780
Number of extensions: 303423
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)