Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 139 RQRRNQTSMNEATRPMQSIPPIHPSN 62
           R+R+   S+NEA   ++ I P  PS+
Sbjct: 261 RERQRTQSLNEAFAALRKIIPTLPSD 286


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 447 VNDHCITAPGMVCLCQRYSTI 509
           +NDHC+T    V +    +TI
Sbjct: 819 INDHCVTTEQSVVVTNVTTTI 839


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 166 PRECNNLITRQRRNQTSMNEATRPMQSIPPIHPSNI 59
           PR CN L T      T  N   R   +   ++PS++
Sbjct: 192 PRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSV 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,530
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)