Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o03f
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    32   0.34 
At1g62700.1 68414.m07077 no apical meristem (NAM) family protein...    32   0.34 
At5g19730.1 68418.m02346 pectinesterase family protein contains ...    29   1.8  
At5g42090.1 68418.m05124 expressed protein                             29   3.2  
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast...    28   5.6  
At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si...    27   7.4  

>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 481 CVFVKDTLQSSSGLLLLNHFLPQEISRPSVWVIEVTFSSRVP 606
           C+F    ++  SG  LLN F PQ +SR  VWV+ V   SR P
Sbjct: 135 CLF-SGCMREYSGSSLLNLFAPQLLSR-KVWVVVVPTGSRNP 174


>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 394

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 572 HTEGREISCGKKWFNNNNPELDCRVSL 492
           H   + + CG   FNNNNP L C+  L
Sbjct: 205 HHHQQTLPCGLNAFNNNNPNLQCKQEL 231


>At5g19730.1 68418.m02346 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 383

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 29  LIVFFWQYKYDIAWVNWGNRLHWSRSL 109
           + VF+ QYK   A  N+G R+ W+R L
Sbjct: 335 MTVFYGQYKCTGAGANYGGRVAWAREL 361


>At5g42090.1 68418.m05124 expressed protein
          Length = 439

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 575 THTEGREISCGKKWFNNNNPELD 507
           TH+   E+   K W +N+NP+LD
Sbjct: 46  THSGRLELDASKIWLSNSNPDLD 68


>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
           transaminase A (ASP3) (YLS4) identical to SP|P46644
           Aspartate aminotransferase, chloroplast precursor (EC
           2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
           identical to cDNA YLS4 mRNA for aspartate
           aminotransferase (ASP3), partial cds GI:13122285
          Length = 449

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 130 RNQTSMNEATRPMQSIPPIHPSNIVFVL 47
           R ++ +    RPM S PPIH ++IV V+
Sbjct: 319 RVESQLKLVIRPMYSSPPIHGASIVAVI 346


>At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:6714534 from [Salix
           gilgiana]
          Length = 380

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 451 LTSEEWMRFHLCLTYESLKITILVYF 374
           + +E W++ H+   Y S KIT +V F
Sbjct: 64  IKAETWLKTHILSRYPSTKITTIVIF 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,023
Number of Sequences: 28952
Number of extensions: 272146
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)