Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o02r
         (751 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    29   0.15 
AJ302662-1|CAC35527.1|   76|Anopheles gambiae gSG9 protein protein.    26   1.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   1.9  
AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein prot...    25   3.3  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   5.8  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -2

Query: 381 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMP-GHMGNRWRT-L 208
           DRG  G+    G+ G     G       PG++G  GE     PG K P GH G   R  +
Sbjct: 126 DRGDPGLPGSLGYPGEKGDLGTPGPPGYPGDVGPKGE-----PGPKGPAGHPGAPGRPGV 180

Query: 207 RGVKILRIDTKYNVIWTLGVAIPGETGAM 121
            GVK L    K ++     + +PG+ G M
Sbjct: 181 DGVKGLP-GLKGDIGAPGVIGLPGQKGDM 208



 Score = 27.1 bits (57), Expect = 0.62
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = -2

Query: 381 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGNRWR 214
           + G +G M   G  G+P   G+       G++G  GEK    P  K    +PG  G   R
Sbjct: 501 EAGAKGEMGIQGLPGLPGPAGLNGLPGMKGDMGPLGEKGDACPVVKGEKGLPGRPGKTGR 560



 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 381 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP 253
           DRG  G+M R G  G+P   G        G  G  G    + P
Sbjct: 598 DRGDSGLMGRPGNDGLPGPQGQRGLPGPQGEKGDQGPPGFIGP 640


>AJ302662-1|CAC35527.1|   76|Anopheles gambiae gSG9 protein protein.
          Length = 76

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 208 QCSPSVTHVSRHFCSRPNSCFFTTRTNITRSS 303
           QCSP     +R + S+P+S   +T  N+ + S
Sbjct: 22  QCSPFFFQYNRPYLSQPSSQLASTAANVVQRS 53


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 381 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG-EKARVWPG-TKMPGHMGNR 220
           DRG  G+    G+ G+P ++GV      PG  G  G       PG + +PG+ G R
Sbjct: 149 DRGRDGLP---GYPGIPGTNGVPGVPGAPGLAGRDGCNGTDGLPGLSGLPGNPGPR 201



 Score = 25.4 bits (53), Expect = 1.9
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 396 RSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKA-RVWPGTKMPGHMGNR 220
           R +   +G QGV  R G +GMP   G        G++G  G +  R +PG   PG  G R
Sbjct: 440 RGQMGPKGGQGVPGRPGPEGMPGDKG---DKGESGSVGMPGPQGPRGYPG--QPGPEGLR 494



 Score = 25.0 bits (52), Expect = 2.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = -2

Query: 399 IRSKTMDRGFQGVMK--------RWGFKGMPASHGVTKTHRRPGNIGSGGEK 268
           ++ +  +RGF+GVM         R G  G+P   G      RPG  G+ GE+
Sbjct: 519 LKGQKGERGFKGVMGTPGDAKEGRPGAPGLPGRDGEKGEPGRPGLPGAKGER 570



 Score = 24.6 bits (51), Expect = 3.3
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -2

Query: 354 RWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 226
           R G KG     G      RPG  G  GE  R +PG  MPG  G
Sbjct: 584 RPGMKGDKGERGYAGEPGRPGASGVPGE--RGYPG--MPGEDG 622



 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -2

Query: 375 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 274
           G  GV    G+ GMP   G       PG  G  G
Sbjct: 604 GASGVPGERGYPGMPGEDGTPGLRGEPGPKGEPG 637



 Score = 23.8 bits (49), Expect = 5.8
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 381 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMG 226
           +RG+ G   R G  G+P   G        G  G  GE     PG K  PG +G
Sbjct: 593 ERGYAGEPGRPGASGVPGERGYPGMPGEDGTPGLRGE-----PGPKGEPGLLG 640



 Score = 23.8 bits (49), Expect = 5.8
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = -2

Query: 375 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGN 223
           G  G+    G KG P   G+      PG  G  G   +   G   PG  GN
Sbjct: 691 GKMGLRGMKGDKGRPGEAGIDGAPGAPGKDGLPGRHGQTVKGE--PGLKGN 739


>AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein
           protein.
          Length = 163

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 512 LECCQKGTSAD 480
           LECCQK T AD
Sbjct: 57  LECCQKDTEAD 67


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 174  ILYQYG-ES*HHAVFSICYPCVQAFLFQAKLVLFHHQNQYYQVF 302
            ++Y +  E+ H+  F++ Y   +  +   K VL H Q  Y Q F
Sbjct: 1295 LVYPFASETYHYHQFNLYYDAQRTSVKNVKFVLQHKQADYDQDF 1338


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,473
Number of Sequences: 2352
Number of extensions: 19496
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)