Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o01f
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    42   5e-06
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 41.5 bits (93), Expect = 5e-06
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
 Frame = +3

Query: 228 VTFFNNSITNITQLSPIPGNRIA-ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQV 404
           V F  NS+ N+ Q +     ++  I    NR+  +E  AF N+  L  L+L  NKI+   
Sbjct: 97  VYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIA--T 154

Query: 405 LRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHV 584
           +  E FQ   E        LE L+L YN I SLD  +F    +L   ++N +  ++++ V
Sbjct: 155 IAYETFQNLPE--------LEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSHNKLINLV 206



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = +3

Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIA-LETL 473
           +    N + E++ D FRN  +L +LD S+N+I      SEI      + ++R +  L  +
Sbjct: 277 LDLSHNSLYELDFDTFRNTKKLQWLDTSHNRI------SEI-----PNDLFRFLGNLRIV 325

Query: 474 NLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNL 617
           +  +N + SL   LF+ T  L RL +++N +  L   S L+++SA  L
Sbjct: 326 DFSHNRLRSLPDNLFRET-GLERLDVSHNLLGKLPLTS-LSLASAQTL 371



 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
 Frame = +3

Query: 222 VLVTFFNNSITNITQ--LSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
           VL   FNN IT++ +    P+  + + +    N+++    D F N+P L  LDLS+N + 
Sbjct: 227 VLDLSFNN-ITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSL- 284

Query: 396 GQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEIL 575
              L  + F+   +        L+ L+  +N I  +   LF++  NL  +  ++N +  L
Sbjct: 285 -YELDFDTFRNTKK--------LQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSL 335



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
 Frame = +3

Query: 309 SNRVIEIEDDAFRNIPRLVYLDLSNNKI------SGQVLRS------------EIFQGPY 434
           S+ V     DA + + RL  LDLSNN++      S   LRS             I +G +
Sbjct: 27  SSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTF 86

Query: 435 EDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATN 614
           +  I+R+  L  +   +N + ++ ++ F     L +++L++N IE L+  + + + S   
Sbjct: 87  QGDIHRD--LTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKR 144

Query: 615 L 617
           L
Sbjct: 145 L 145



 Score = 28.3 bits (60), Expect = 0.055
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = +3

Query: 330 EDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDR 509
           +D     +  +  LDLS N I+   +  + F+ P E      ++L  L LG+N++ +  +
Sbjct: 215 QDTGLGGLQNIKVLDLSFNNITS--VAKQFFR-PVE------LSLMQLYLGHNKLLNATK 265

Query: 510 YLFKYTPNLTRLYLNNNPIEILD 578
            LF   P+L  L L++N +  LD
Sbjct: 266 DLFGNMPHLQVLDLSHNSLYELD 288



 Score = 28.3 bits (60), Expect = 0.055
 Identities = 25/85 (29%), Positives = 39/85 (45%)
 Frame = +3

Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
           NR+ +I+   F+ IPRL  L+L +N      +    FQG      Y  + L   N+  ++
Sbjct: 404 NRLGQIDAGTFKGIPRLASLNLGHNSQLTLEINGLSFQGLE----YTLLHLNLDNVSLSQ 459

Query: 492 IHSLDRYLFKYTPNLTRLYLNNNPI 566
           + +L       TPNL  L L  N +
Sbjct: 460 VPALS------TPNLLSLSLAFNSL 478


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 HYKYNATESDTGEQDRDQFQIKSR 319
           HY+  A +  T ++DR ++ + +R
Sbjct: 52  HYEGRAVDITTSDRDRSKYGMLAR 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,768
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)