Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n24r
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353     36   0.026
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    28   6.8  

>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
          Length = 135

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 469 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE*MTSVVW-ISFPTQRLSKLP--FMHA 302
           H +++WK   ++    KH  TEK L  G S  E  TS  W +    Q + KL   +MHA
Sbjct: 71  HYQLRWKGKLSTSGSCKHSETEKLLYRGLSKSERYTSTFWMVCMDNQSIKKLDNNYMHA 129


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 270 PDCKGIIIDSSACMKGSFDNLWVGNEIHTTEVIHSFADFPTINVFSVEICFISVIE 437
           P+ K  +  S  C+    + L + +    T V+HSFA +P IN  +  + +IS +E
Sbjct: 314 PNVKRGLYLSIECINTLNEGLVLHHASGMTYVLHSFARYPAINKPAAVLHWISHVE 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,964
Number of Sequences: 37544
Number of extensions: 325159
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)