Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n24r
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52499| Best HMM Match : COX5A (HMM E-Value=0) 149 2e-36
SB_39596| Best HMM Match : TTL (HMM E-Value=0) 30 1.7
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054) 28 5.2
SB_56875| Best HMM Match : LON (HMM E-Value=0) 28 6.9
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 28 6.9
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 28 6.9
SB_56923| Best HMM Match : PT (HMM E-Value=0.95) 28 6.9
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_52499| Best HMM Match : COX5A (HMM E-Value=0)
Length = 208
Score = 149 bits (361), Expect = 2e-36
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Frame = -2
Query: 458 PVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYAL 279
PVES+E FD R+EAYF+R DID WE+R+G+N+L G DLVP+PKII A HACRR+NDY
Sbjct: 104 PVESEEAFDARWEAYFSRPDIDAWELRRGLNELYGHDLVPEPKIINAMFHACRRLNDYGT 163
Query: 278 AVRFIEACKDK-CGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDK 141
VR +EA KDK GNK EIYPYI+Q+ KP + ELGI TPEELG K
Sbjct: 164 TVRILEAVKDKAAGNK--EIYPYILQQCKPVMEELGILTPEELGLAK 208
>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 555 EIRIRCVCKCP*KI-ISSCREGQRRICTEITRRSSGK 448
++RI + KC + I CREG R CTE+ R S K
Sbjct: 434 DLRIYVLVKCLDPLEIYVCREGMGRFCTEVYRPPSQK 470
>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
Length = 425
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 141 LIVAKLLRCVNTQFGESRLDLLNDVWVDFIHFVSTFVFAGFYKPD 275
L++ +L +N+ +SRL + +D V F F TF F Y PD
Sbjct: 364 LVLVVILVALNSGLIKSRLVVHDDAVVWFAKFSQTFSFVCGYMPD 408
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 390 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 295
+GN + N P W RS+ KD QS P T+
Sbjct: 846 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 877
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 213 VWVDFIHFVSTFVFAGFYKPDCKGIIIDSSACMKGSFDNL 332
+W D HF S + + C G I D+S C+K +L
Sbjct: 445 LWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTSSL 484
>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 390 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 295
+GN + N P W RS+ KD QS P T+
Sbjct: 376 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 407
>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
Length = 441
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 182 ELGIDTPEELGYDKPELALES 120
ELG+D EEL D PEL L S
Sbjct: 242 ELGVDLQEELNRDAPELMLLS 262
>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 332 LGRERDPYHRGHSFLCG 382
+GRE PY + HS++CG
Sbjct: 248 IGREIQPYSKPHSYVCG 264
>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 153 WLR*ARTRFRKCLPHVKLLTYAVVKL 76
++R TRFR C+P K+L A+ +L
Sbjct: 104 YIRRQNTRFRNCIPPEKILAVALYRL 129
>SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 153 WLR*ARTRFRKCLPHVKLLTYAVVKL 76
++R TRFR C+P K+L A+ +L
Sbjct: 104 YIRRQNTRFRNCIPPEKILAVALYRL 129
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 469 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE 371
HT + KNS T +KH+ T +G SAKE
Sbjct: 176 HTGARKAFTKNSRTLLKHVKEIATKSMGDSAKE 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,343
Number of Sequences: 59808
Number of extensions: 386988
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -